Potassium in PDB 7bwv: Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-

Protein crystallography data

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv was solved by S.Batra, B.Prakash, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.63 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.699, 73.614, 156.754, 90, 90, 90
R / Rfree (%) 19.3 / 23.2

Other elements in 7bwv:

The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Aluminium (Al) 2 atoms
Fluorine (F) 8 atoms
Magnesium (Mg) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- (pdb code 7bwv). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 7bwv

Go back to Potassium Binding Sites List in 7bwv
Potassium binding site 1 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K304

b:35.6
occ:1.00
OD1 A:ASN11 2.7 44.5 1.0
F4 A:ALF302 2.7 41.9 1.0
O A:GLY29 2.7 37.7 1.0
O A:TRP31 2.8 38.7 1.0
O3B A:GDP301 2.8 32.3 1.0
O2A A:GDP301 3.0 29.1 1.0
O3A A:GDP301 3.5 42.1 1.0
AL A:ALF302 3.6 37.7 1.0
F2 A:ALF302 3.7 39.6 1.0
C5' A:GDP301 3.7 35.3 1.0
CG2 A:VAL34 3.7 24.5 1.0
PA A:GDP301 3.8 29.6 1.0
C A:TRP31 3.8 42.8 1.0
CG A:ASN11 3.8 38.6 1.0
PB A:GDP301 3.9 31.3 1.0
C A:GLY29 3.9 38.5 1.0
O A:HOH433 3.9 28.5 1.0
CA A:ASN11 4.0 41.1 1.0
CB A:VAL34 4.1 35.5 1.0
N A:TRP31 4.2 38.0 1.0
O5' A:GDP301 4.2 32.9 1.0
F1 A:ALF302 4.2 33.5 1.0
N A:ASN11 4.3 38.1 1.0
N A:GLY29 4.3 35.8 1.0
CA A:PRO32 4.4 38.1 1.0
CB A:ASN11 4.4 40.3 1.0
N A:VAL34 4.4 33.6 1.0
O2B A:GDP301 4.5 31.7 1.0
N A:PRO32 4.5 43.5 1.0
CA A:GLY29 4.5 35.0 1.0
N A:GLY33 4.7 30.1 1.0
CA A:TRP31 4.7 31.3 1.0
C A:PRO32 4.8 31.4 1.0
ND2 A:ASN11 4.8 42.9 1.0
CA A:VAL34 4.9 40.2 1.0
F3 A:ALF302 4.9 33.1 1.0
N A:ASN30 4.9 34.2 1.0
C4' A:GDP301 5.0 40.1 1.0

Potassium binding site 2 out of 2 in 7bwv

Go back to Potassium Binding Sites List in 7bwv
Potassium binding site 2 out of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K304

b:32.7
occ:1.00
O B:TRP31 2.7 30.3 1.0
F3 B:ALF302 2.7 33.9 1.0
O B:GLY29 2.7 30.3 1.0
OD1 B:ASN11 2.8 35.3 1.0
O1B B:GDP301 2.9 28.9 1.0
O1A B:GDP301 3.1 28.3 1.0
F1 B:ALF302 3.6 32.3 1.0
O5' B:GDP301 3.6 39.3 1.0
AL B:ALF302 3.7 31.9 1.0
CG2 B:VAL34 3.7 24.3 1.0
C B:TRP31 3.7 33.7 1.0
PA B:GDP301 3.8 30.9 1.0
O3A B:GDP301 3.8 31.1 1.0
CG B:ASN11 3.8 31.5 1.0
C B:GLY29 3.8 32.3 1.0
PB B:GDP301 3.9 27.6 1.0
O B:HOH404 3.9 24.0 1.0
CB B:VAL34 4.0 30.5 1.0
CA B:ASN11 4.1 27.4 1.0
N B:TRP31 4.2 30.3 1.0
N B:GLY29 4.2 30.2 1.0
CA B:PRO32 4.3 28.2 1.0
F2 B:ALF302 4.4 31.6 1.0
N B:VAL34 4.4 29.8 1.0
CA B:GLY29 4.4 32.7 1.0
N B:ASN11 4.4 26.1 1.0
CB B:ASN11 4.4 28.7 1.0
N B:PRO32 4.4 32.8 1.0
O3B B:GDP301 4.5 28.0 1.0
C5' B:GDP301 4.6 34.4 1.0
N B:GLY33 4.6 28.7 1.0
CA B:TRP31 4.6 28.1 1.0
C B:PRO32 4.8 34.7 1.0
ND2 B:ASN11 4.8 27.7 1.0
CA B:VAL34 4.9 32.3 1.0
N B:ASN30 4.9 31.1 1.0

Reference:

S.Batra, B.Prakash. Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Sat Jul 10 16:25:47 2021

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