Potassium in PDB 7bwv: Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
Protein crystallography data
The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv
was solved by
S.Batra,
B.Prakash,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.63 /
2.35
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.699,
73.614,
156.754,
90,
90,
90
|
R / Rfree (%)
|
19.3 /
23.2
|
Other elements in 7bwv:
The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
(pdb code 7bwv). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 7bwv
Go back to
Potassium Binding Sites List in 7bwv
Potassium binding site 1 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K304
b:35.6
occ:1.00
|
OD1
|
A:ASN11
|
2.7
|
44.5
|
1.0
|
F4
|
A:ALF302
|
2.7
|
41.9
|
1.0
|
O
|
A:GLY29
|
2.7
|
37.7
|
1.0
|
O
|
A:TRP31
|
2.8
|
38.7
|
1.0
|
O3B
|
A:GDP301
|
2.8
|
32.3
|
1.0
|
O2A
|
A:GDP301
|
3.0
|
29.1
|
1.0
|
O3A
|
A:GDP301
|
3.5
|
42.1
|
1.0
|
AL
|
A:ALF302
|
3.6
|
37.7
|
1.0
|
F2
|
A:ALF302
|
3.7
|
39.6
|
1.0
|
C5'
|
A:GDP301
|
3.7
|
35.3
|
1.0
|
CG2
|
A:VAL34
|
3.7
|
24.5
|
1.0
|
PA
|
A:GDP301
|
3.8
|
29.6
|
1.0
|
C
|
A:TRP31
|
3.8
|
42.8
|
1.0
|
CG
|
A:ASN11
|
3.8
|
38.6
|
1.0
|
PB
|
A:GDP301
|
3.9
|
31.3
|
1.0
|
C
|
A:GLY29
|
3.9
|
38.5
|
1.0
|
O
|
A:HOH433
|
3.9
|
28.5
|
1.0
|
CA
|
A:ASN11
|
4.0
|
41.1
|
1.0
|
CB
|
A:VAL34
|
4.1
|
35.5
|
1.0
|
N
|
A:TRP31
|
4.2
|
38.0
|
1.0
|
O5'
|
A:GDP301
|
4.2
|
32.9
|
1.0
|
F1
|
A:ALF302
|
4.2
|
33.5
|
1.0
|
N
|
A:ASN11
|
4.3
|
38.1
|
1.0
|
N
|
A:GLY29
|
4.3
|
35.8
|
1.0
|
CA
|
A:PRO32
|
4.4
|
38.1
|
1.0
|
CB
|
A:ASN11
|
4.4
|
40.3
|
1.0
|
N
|
A:VAL34
|
4.4
|
33.6
|
1.0
|
O2B
|
A:GDP301
|
4.5
|
31.7
|
1.0
|
N
|
A:PRO32
|
4.5
|
43.5
|
1.0
|
CA
|
A:GLY29
|
4.5
|
35.0
|
1.0
|
N
|
A:GLY33
|
4.7
|
30.1
|
1.0
|
CA
|
A:TRP31
|
4.7
|
31.3
|
1.0
|
C
|
A:PRO32
|
4.8
|
31.4
|
1.0
|
ND2
|
A:ASN11
|
4.8
|
42.9
|
1.0
|
CA
|
A:VAL34
|
4.9
|
40.2
|
1.0
|
F3
|
A:ALF302
|
4.9
|
33.1
|
1.0
|
N
|
A:ASN30
|
4.9
|
34.2
|
1.0
|
C4'
|
A:GDP301
|
5.0
|
40.1
|
1.0
|
|
Potassium binding site 2 out
of 2 in 7bwv
Go back to
Potassium Binding Sites List in 7bwv
Potassium binding site 2 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K304
b:32.7
occ:1.00
|
O
|
B:TRP31
|
2.7
|
30.3
|
1.0
|
F3
|
B:ALF302
|
2.7
|
33.9
|
1.0
|
O
|
B:GLY29
|
2.7
|
30.3
|
1.0
|
OD1
|
B:ASN11
|
2.8
|
35.3
|
1.0
|
O1B
|
B:GDP301
|
2.9
|
28.9
|
1.0
|
O1A
|
B:GDP301
|
3.1
|
28.3
|
1.0
|
F1
|
B:ALF302
|
3.6
|
32.3
|
1.0
|
O5'
|
B:GDP301
|
3.6
|
39.3
|
1.0
|
AL
|
B:ALF302
|
3.7
|
31.9
|
1.0
|
CG2
|
B:VAL34
|
3.7
|
24.3
|
1.0
|
C
|
B:TRP31
|
3.7
|
33.7
|
1.0
|
PA
|
B:GDP301
|
3.8
|
30.9
|
1.0
|
O3A
|
B:GDP301
|
3.8
|
31.1
|
1.0
|
CG
|
B:ASN11
|
3.8
|
31.5
|
1.0
|
C
|
B:GLY29
|
3.8
|
32.3
|
1.0
|
PB
|
B:GDP301
|
3.9
|
27.6
|
1.0
|
O
|
B:HOH404
|
3.9
|
24.0
|
1.0
|
CB
|
B:VAL34
|
4.0
|
30.5
|
1.0
|
CA
|
B:ASN11
|
4.1
|
27.4
|
1.0
|
N
|
B:TRP31
|
4.2
|
30.3
|
1.0
|
N
|
B:GLY29
|
4.2
|
30.2
|
1.0
|
CA
|
B:PRO32
|
4.3
|
28.2
|
1.0
|
F2
|
B:ALF302
|
4.4
|
31.6
|
1.0
|
N
|
B:VAL34
|
4.4
|
29.8
|
1.0
|
CA
|
B:GLY29
|
4.4
|
32.7
|
1.0
|
N
|
B:ASN11
|
4.4
|
26.1
|
1.0
|
CB
|
B:ASN11
|
4.4
|
28.7
|
1.0
|
N
|
B:PRO32
|
4.4
|
32.8
|
1.0
|
O3B
|
B:GDP301
|
4.5
|
28.0
|
1.0
|
C5'
|
B:GDP301
|
4.6
|
34.4
|
1.0
|
N
|
B:GLY33
|
4.6
|
28.7
|
1.0
|
CA
|
B:TRP31
|
4.6
|
28.1
|
1.0
|
C
|
B:PRO32
|
4.8
|
34.7
|
1.0
|
ND2
|
B:ASN11
|
4.8
|
27.7
|
1.0
|
CA
|
B:VAL34
|
4.9
|
32.3
|
1.0
|
N
|
B:ASN30
|
4.9
|
31.1
|
1.0
|
|
Reference:
S.Batra,
B.Prakash.
Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Sat Jul 10 16:25:47 2021
|