Potassium in PDB 7bvu: Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-
Protein crystallography data
The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu
was solved by
S.Batra,
B.Prakash,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.83 /
2.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.619,
72.402,
157.957,
90,
90,
90
|
R / Rfree (%)
|
19.1 /
22.9
|
Other elements in 7bvu:
The structure of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-
(pdb code 7bvu). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the
Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-, PDB code: 7bvu:
Jump to Potassium binding site number:
1;
2;
Potassium binding site 1 out
of 2 in 7bvu
Go back to
Potassium Binding Sites List in 7bvu
Potassium binding site 1 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K305
b:38.2
occ:1.00
|
O1A
|
A:GDP302
|
2.7
|
22.9
|
1.0
|
O
|
A:TRP31
|
2.8
|
36.3
|
1.0
|
O1B
|
A:GDP302
|
2.8
|
25.9
|
1.0
|
O
|
A:GLY29
|
2.8
|
36.0
|
1.0
|
F1
|
A:ALF303
|
2.8
|
35.3
|
1.0
|
OD1
|
A:ASN11
|
2.8
|
35.5
|
1.0
|
CG2
|
A:VAL34
|
3.5
|
28.7
|
1.0
|
AL
|
A:ALF303
|
3.7
|
28.8
|
1.0
|
F3
|
A:ALF303
|
3.7
|
32.3
|
1.0
|
C
|
A:TRP31
|
3.8
|
38.2
|
1.0
|
PA
|
A:GDP302
|
3.8
|
32.3
|
1.0
|
O
|
A:HOH438
|
3.8
|
25.2
|
1.0
|
C5'
|
A:GDP302
|
3.8
|
31.3
|
1.0
|
C
|
A:GLY29
|
3.9
|
33.9
|
1.0
|
O3A
|
A:GDP302
|
3.9
|
30.8
|
1.0
|
PB
|
A:GDP302
|
3.9
|
27.8
|
1.0
|
CG
|
A:ASN11
|
3.9
|
35.4
|
1.0
|
CB
|
A:VAL34
|
3.9
|
34.9
|
1.0
|
CA
|
A:ASN11
|
4.1
|
32.8
|
1.0
|
N
|
A:GLY29
|
4.2
|
33.0
|
1.0
|
CA
|
A:PRO32
|
4.2
|
36.3
|
1.0
|
N
|
A:VAL34
|
4.3
|
33.9
|
1.0
|
O5'
|
A:GDP302
|
4.4
|
30.4
|
1.0
|
N
|
A:TRP31
|
4.4
|
35.1
|
1.0
|
N
|
A:PRO32
|
4.4
|
40.1
|
1.0
|
CA
|
A:GLY29
|
4.4
|
32.8
|
1.0
|
F4
|
A:ALF303
|
4.4
|
31.9
|
1.0
|
N
|
A:ASN11
|
4.5
|
30.1
|
1.0
|
CB
|
A:ASN11
|
4.5
|
33.1
|
1.0
|
N
|
A:GLY33
|
4.5
|
34.6
|
1.0
|
O3B
|
A:GDP302
|
4.5
|
24.1
|
1.0
|
C
|
A:PRO32
|
4.6
|
32.4
|
1.0
|
CA
|
A:TRP31
|
4.8
|
35.9
|
1.0
|
CA
|
A:VAL34
|
4.8
|
31.4
|
1.0
|
N
|
A:ASN30
|
5.0
|
37.6
|
1.0
|
MG
|
A:MG304
|
5.0
|
24.4
|
1.0
|
ND2
|
A:ASN11
|
5.0
|
36.3
|
1.0
|
|
Potassium binding site 2 out
of 2 in 7bvu
Go back to
Potassium Binding Sites List in 7bvu
Potassium binding site 2 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K305
b:33.0
occ:1.00
|
O2A
|
B:GDP302
|
2.7
|
25.4
|
1.0
|
F2
|
B:ALF303
|
2.8
|
30.2
|
1.0
|
O
|
B:TRP31
|
2.8
|
30.6
|
1.0
|
OD1
|
B:ASN11
|
2.9
|
29.8
|
1.0
|
O
|
B:GLY29
|
2.9
|
35.0
|
1.0
|
O3B
|
B:GDP302
|
2.9
|
21.7
|
1.0
|
F4
|
B:ALF303
|
3.5
|
30.1
|
1.0
|
CG2
|
B:VAL34
|
3.6
|
25.3
|
1.0
|
AL
|
B:ALF303
|
3.7
|
27.0
|
1.0
|
C
|
B:TRP31
|
3.7
|
32.1
|
1.0
|
PA
|
B:GDP302
|
3.8
|
25.4
|
1.0
|
O
|
B:HOH424
|
3.8
|
24.2
|
1.0
|
C5'
|
B:GDP302
|
3.9
|
30.6
|
1.0
|
O3A
|
B:GDP302
|
3.9
|
30.8
|
1.0
|
CG
|
B:ASN11
|
3.9
|
32.1
|
1.0
|
C
|
B:GLY29
|
4.0
|
36.4
|
1.0
|
PB
|
B:GDP302
|
4.0
|
25.2
|
1.0
|
CB
|
B:VAL34
|
4.0
|
27.8
|
1.0
|
CA
|
B:ASN11
|
4.1
|
28.3
|
1.0
|
CA
|
B:PRO32
|
4.2
|
33.8
|
1.0
|
N
|
B:VAL34
|
4.3
|
27.1
|
1.0
|
N
|
B:GLY29
|
4.3
|
32.0
|
1.0
|
N
|
B:PRO32
|
4.3
|
32.9
|
1.0
|
N
|
B:TRP31
|
4.4
|
31.1
|
1.0
|
O5'
|
B:GDP302
|
4.4
|
30.7
|
1.0
|
N
|
B:ASN11
|
4.4
|
25.6
|
1.0
|
N
|
B:GLY33
|
4.4
|
30.2
|
1.0
|
CB
|
B:ASN11
|
4.5
|
28.8
|
1.0
|
F3
|
B:ALF303
|
4.6
|
27.1
|
1.0
|
CA
|
B:GLY29
|
4.6
|
30.9
|
1.0
|
O2B
|
B:GDP302
|
4.6
|
23.7
|
1.0
|
C
|
B:PRO32
|
4.6
|
33.8
|
1.0
|
CA
|
B:TRP31
|
4.7
|
31.7
|
1.0
|
CA
|
B:VAL34
|
4.8
|
25.3
|
1.0
|
ND2
|
B:ASN11
|
5.0
|
36.2
|
1.0
|
|
Reference:
S.Batra,
B.Prakash.
Crystal Structure of S. Thermophilus Nfeob E66A.E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Sat Apr 17 16:16:11 2021
|