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Potassium in PDB 7bqg: Complex Structure of SAV1 and Dendrin

Protein crystallography data

The structure of Complex Structure of SAV1 and Dendrin, PDB code: 7bqg was solved by Z.Lin, M.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.69 / 1.55
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 38.803, 43.084, 99.385, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.7

Potassium Binding Sites:

The binding sites of Potassium atom in the Complex Structure of SAV1 and Dendrin (pdb code 7bqg). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Complex Structure of SAV1 and Dendrin, PDB code: 7bqg:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in 7bqg

Go back to Potassium Binding Sites List in 7bqg
Potassium binding site 1 out of 3 in the Complex Structure of SAV1 and Dendrin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Complex Structure of SAV1 and Dendrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K301

b:13.2
occ:0.50
O A:TYR263 2.7 12.9 1.0
O A:THR251 2.8 13.8 1.0
C A:THR251 3.8 15.3 1.0
C A:TYR263 3.8 12.6 1.0
CE2 A:TYR253 4.2 11.0 1.0
O A:HOH428 4.3 13.7 1.0
CA A:TYR263 4.4 11.6 1.0
CB A:THR251 4.4 15.0 1.0
CA A:TYR252 4.5 10.8 1.0
CB A:TYR263 4.5 12.8 1.0
N A:TYR252 4.6 10.8 1.0
CA A:THR251 4.7 9.9 1.0
CD2 A:TYR253 4.8 9.0 1.0
CG2 A:THR251 4.8 19.9 1.0
N A:ARG264 4.9 15.1 1.0

Potassium binding site 2 out of 3 in 7bqg

Go back to Potassium Binding Sites List in 7bqg
Potassium binding site 2 out of 3 in the Complex Structure of SAV1 and Dendrin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Complex Structure of SAV1 and Dendrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K302

b:15.7
occ:1.00
O A:TRP206 2.7 12.3 1.0
O A:HOH412 2.9 22.7 1.0
O A:HOH489 3.0 30.7 1.0
C A:TRP206 3.9 9.6 1.0
N A:TRP206 4.4 10.0 1.0
CA A:TRP206 4.8 9.6 1.0
CD1 A:LEU202 4.8 24.9 1.0
N A:SER207 4.8 9.4 1.0
CA A:SER207 4.8 9.6 1.0
N A:GLY205 4.9 10.8 1.0

Potassium binding site 3 out of 3 in 7bqg

Go back to Potassium Binding Sites List in 7bqg
Potassium binding site 3 out of 3 in the Complex Structure of SAV1 and Dendrin


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Complex Structure of SAV1 and Dendrin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K303

b:19.7
occ:0.50
OD1 A:ASN222 2.6 13.4 1.0
O A:HOH472 2.9 36.6 1.0
CG A:ASN222 3.6 10.5 1.0
O A:PRO204 3.7 11.7 1.0
ND2 A:ASN222 4.1 10.4 1.0
O A:HOH445 4.2 20.9 1.0
C A:PRO204 4.3 11.1 1.0
CB A:PRO204 4.4 15.4 1.0
CB A:ASN222 4.8 10.3 1.0
CA A:GLY205 4.8 10.5 1.0
N A:GLY205 4.9 10.8 1.0

Reference:

Z.Lin, R.Xie, K.Guan, M.Zhang. A Ww Tandem-Mediated Dimerization Mode of SAV1 Essential For Hippo Signaling. Cell Rep V. 32 08118 2020.
ISSN: ESSN 2211-1247
PubMed: 32905778
DOI: 10.1016/J.CELREP.2020.108118
Page generated: Mon Aug 12 18:45:52 2024

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