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Potassium in PDB 7a4v: Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State

Enzymatic activity of Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State

All present enzymatic activity of Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State:
3.6.4.10;

Protein crystallography data

The structure of Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State, PDB code: 7a4v was solved by L.A.Perera, D.Ron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.27 / 1.94
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.179, 51.249, 118.801, 90.00, 99.77, 90.00
R / Rfree (%) 18.4 / 22.6

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State (pdb code 7a4v). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State, PDB code: 7a4v:

Potassium binding site 1 out of 1 in 7a4v

Go back to Potassium Binding Sites List in 7a4v
Potassium binding site 1 out of 1 in the Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Lid-Truncated Adp-Bound Bip in An Oligomeric State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K604

b:30.5
occ:0.90
O A:HOH928 2.7 38.8 1.0
O A:TYR39 2.7 25.5 1.0
O A:HOH834 2.7 29.3 1.0
OD2 A:ASP34 2.7 25.6 1.0
O A:HOH788 2.7 30.6 1.0
O1B A:ADP601 2.7 35.3 1.0
O3A A:ADP601 2.7 38.0 1.0
PB A:ADP601 3.3 41.7 1.0
CG A:ASP34 3.5 24.1 1.0
O3B A:ADP601 3.6 44.5 1.0
OD1 A:ASP34 3.6 23.5 1.0
C A:TYR39 3.8 23.7 1.0
PA A:ADP601 3.9 35.5 1.0
CA A:GLY36 3.9 20.9 1.0
O2A A:ADP601 4.0 39.0 1.0
O1A A:ADP601 4.2 36.8 1.0
O A:HOH939 4.3 37.4 1.0
O A:HOH721 4.3 29.1 1.0
CB A:TYR39 4.4 27.4 1.0
CA A:TYR39 4.5 24.9 1.0
N A:TYR39 4.6 23.9 1.0
N A:GLY36 4.6 20.2 1.0
O2B A:ADP601 4.7 43.2 1.0
O A:HOH800 4.7 22.9 1.0
N A:SER40 4.8 21.7 1.0
CB A:ASP34 4.8 21.9 1.0
O A:ASP391 4.8 25.0 1.0
C A:GLY36 5.0 21.1 1.0
CA A:SER40 5.0 20.2 1.0

Reference:

S.Preissler, C.Rato, Y.Yan, L.A.Perera, A.Czako, D.Ron. Calcium Depletion Challenges Endoplasmic Reticulum Proteostasis By Destabilising Bip-Substrate Complexes. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 33295873
DOI: 10.7554/ELIFE.62601
Page generated: Mon Aug 12 18:35:38 2024

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