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Potassium in PDB 7a0s: 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I

Protein crystallography data

The structure of 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I, PDB code: 7a0s was solved by E.Breiner, Z.Eyal, D.Matzov, Y.Halfon, G.Cimicata, H.Rozenberg, E.Zimmerman, A.Bashan, A.Yonath, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.67 / 3.22
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 169.995, 410.736, 697.778, 90, 90, 90
R / Rfree (%) 22.4 / 25.3

Other elements in 7a0s:

The structure of 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I also contains other interesting chemical elements:

Sodium (Na) 1 atom
Magnesium (Mg) 367 atoms
Calcium (Ca) 5 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I (pdb code 7a0s). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I, PDB code: 7a0s:

Potassium binding site 1 out of 1 in 7a0s

Go back to Potassium Binding Sites List in 7a0s
Potassium binding site 1 out of 1 in the 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I within 5.0Å range:
probe atom residue distance (Å) B Occ
X:K3256

b:89.4
occ:1.00
OP2 X:G2661 2.4 84.0 1.0
OP1 X:A2701 2.4 81.7 1.0
P X:A2701 3.5 81.0 1.0
P X:G2661 3.6 84.6 1.0
O5' X:A2701 3.7 80.8 1.0
O5' X:G2661 4.0 85.2 1.0
C5' X:A2701 4.1 81.0 1.0
OP2 X:G2702 4.2 80.8 1.0
OP1 X:G2661 4.2 84.9 1.0
OP2 X:A2701 4.2 80.7 1.0
C5' X:G2661 4.7 85.9 1.0
O3' X:U2700 4.7 80.9 1.0
O3' X:C2660 4.8 82.8 1.0
OP2 X:C2662 4.8 83.4 1.0

Reference:

E.Breiner, Z.Eyal, D.Matzov, Y.Halfon, G.Cimicata, H.Rozenberg, E.Zimmerman, A.Bashan, A.Yonath. 50S Deinococcus Radiodurans Ribosome Bounded with Mycinamicin I To Be Published.
Page generated: Sat Aug 21 14:35:54 2021

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