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Potassium in PDB 6zrw: Crystal Structure of the Fungal Lectin CML1

Protein crystallography data

The structure of Crystal Structure of the Fungal Lectin CML1, PDB code: 6zrw was solved by S.Bleuler-Martinez, V.Olieric, M.Sharpe, G.Capitani, M.Aebi, M.Kuenzler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.17 / 1.35
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.497, 73.626, 111.956, 90, 101.03, 90
R / Rfree (%) 14.6 / 17.6

Other elements in 6zrw:

The structure of Crystal Structure of the Fungal Lectin CML1 also contains other interesting chemical elements:

Chlorine (Cl) 26 atoms
Platinum (Pt) 8 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Fungal Lectin CML1 (pdb code 6zrw). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Crystal Structure of the Fungal Lectin CML1, PDB code: 6zrw:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Potassium binding site 1 out of 8 in 6zrw

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Potassium binding site 1 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K206

b:62.4
occ:1.00
O A:HOH424 2.7 46.9 1.0
OE2 A:GLU9 2.9 19.7 1.0
O B:HOH357 3.1 22.9 1.0
N A:GLY7 3.6 19.2 1.0
O B:HOH418 3.6 27.6 1.0
CA A:GLY7 3.7 20.0 1.0
CD A:GLU9 3.8 19.6 1.0
O B:HOH355 3.8 26.4 1.0
O B:HOH353 3.9 20.4 1.0
OE1 A:GLU9 4.0 19.2 1.0
O A:HOH310 4.0 19.3 1.0
CG2 A:THR6 4.0 21.4 1.0
O B:HOH392 4.4 47.8 1.0
O A:HOH337 4.6 25.4 1.0
C A:THR6 4.6 20.5 1.0
O B:HOH371 4.7 31.2 1.0
O B:HOH360 4.7 23.7 1.0
C A:GLY7 4.8 20.1 1.0
CB B:ALA122 4.8 15.1 1.0
O B:ALA122 4.9 17.3 1.0

Potassium binding site 2 out of 8 in 6zrw

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Potassium binding site 2 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K204

b:91.5
occ:1.00
CD B:LYS116 4.1 31.9 1.0
CE B:LYS19 4.1 38.5 1.0
CG B:PRO39 4.2 23.2 1.0
NZ B:LYS19 4.3 40.2 1.0
CG B:LYS116 4.4 27.3 1.0
CB B:PRO39 4.6 23.9 1.0
CD B:PRO39 4.7 23.3 1.0

Potassium binding site 3 out of 8 in 6zrw

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Potassium binding site 3 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K205

b:81.6
occ:1.00
O C:HOH358 3.6 35.0 1.0
O C:HOH371 4.3 37.3 1.0
O C:SER106 4.8 30.6 1.0

Potassium binding site 4 out of 8 in 6zrw

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Potassium binding site 4 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K206

b:78.5
occ:1.00
O D:HOH446 2.5 37.7 1.0
O D:HOH416 2.6 60.2 1.0
O D:HOH457 2.6 50.9 1.0
O D:ASN29 2.8 29.4 1.0
ND2 C:ASN29 3.7 44.5 1.0
C D:ASN29 3.9 29.0 1.0
CB D:ASN30 4.2 31.7 1.0
CB C:ASN29 4.5 39.8 1.0
CB D:ASN29 4.5 32.9 1.0
CG C:ASN29 4.5 43.4 1.0
O D:HOH426 4.6 50.1 1.0
CA D:ASN29 4.7 28.9 1.0
N D:ASN30 4.8 28.2 1.0
CA D:ASN30 4.9 28.3 1.0
C D:ASN30 5.0 25.6 1.0

Potassium binding site 5 out of 8 in 6zrw

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Potassium binding site 5 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K205

b:87.6
occ:1.00
O E:HOH467 3.0 46.6 1.0
O E:HOH404 3.1 31.9 1.0
CE E:LYS116 3.3 27.3 1.0
NZ E:LYS116 3.9 31.0 1.0
O E:HOH442 4.0 53.9 1.0
O E:HOH303 4.2 54.5 1.0
CD E:LYS116 4.5 22.7 1.0
CG E:LYS116 4.8 18.2 1.0
CG E:PRO39 4.9 16.6 1.0

Potassium binding site 6 out of 8 in 6zrw

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Potassium binding site 6 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K206

b:40.6
occ:1.00
O E:HOH405 2.5 20.6 1.0
O E:HOH460 4.1 47.8 1.0
CE3 E:TRP25 4.2 13.6 1.0
CA E:GLY26 4.2 15.2 1.0
O E:HOH322 4.3 34.9 1.0
CZ3 E:TRP25 4.3 14.7 1.0
N E:GLY26 4.4 15.1 1.0

Potassium binding site 7 out of 8 in 6zrw

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Potassium binding site 7 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K204

b:65.6
occ:1.00
O F:HOH401 2.9 30.9 1.0
N F:THR43 3.3 19.6 1.0
OG1 F:THR43 3.5 24.5 1.0
CA F:ASN42 3.7 19.2 1.0
OD1 F:ASN42 3.9 23.7 1.0
C F:ASN42 4.0 19.2 1.0
CB F:ASN42 4.2 20.5 1.0
CB F:THR43 4.3 22.5 1.0
CA F:THR43 4.3 20.5 1.0
CG F:ASN42 4.4 21.4 1.0
CG2 F:THR43 4.4 23.8 1.0
O F:GLU41 4.6 21.6 1.0
N F:GLY44 4.7 17.4 1.0
N F:ASN42 4.8 18.7 1.0
O F:HOH441 4.8 59.7 1.0

Potassium binding site 8 out of 8 in 6zrw

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Potassium binding site 8 out of 8 in the Crystal Structure of the Fungal Lectin CML1


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of the Fungal Lectin CML1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K205

b:95.6
occ:1.00
O F:HOH413 2.7 20.6 1.0
OD2 F:ASP125 2.7 22.1 1.0
NH1 B:ARG15 3.1 18.2 1.0
CG F:ASP125 3.1 19.7 1.0
ND2 E:ASN75 3.1 22.7 1.0
O F:HOH340 3.1 37.5 1.0
OD1 F:ASP125 3.4 18.6 1.0
O F:HOH328 3.8 39.6 1.0
CZ B:ARG15 3.8 19.2 1.0
CB F:ASP125 4.0 18.2 1.0
NH2 B:ARG15 4.1 17.8 1.0
O B:HOH388 4.2 27.7 1.0
CG E:ASN75 4.3 19.5 1.0
CB E:ASN75 4.5 16.5 1.0
N F:ASP125 4.8 15.0 1.0
NE B:ARG15 4.8 19.2 1.0

Reference:

S.Bleuler-Martinez, A.Varrot, V.Olieric, M.Schubert, T.Wohlschlager, D.Plaza, M.Waelti, Y.Duport, G.Capitani, M.Aebi, M.Kuenzler. Structure and Function of A Novel Fucose-Binding Protein From the Mushroom Coprinopsis Cinerea To Be Published.
Page generated: Sat Aug 21 14:35:35 2021

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