Potassium in PDB 6yso: Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing

Enzymatic activity of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing

All present enzymatic activity of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing:
7.2.2.10;

Protein crystallography data

The structure of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing, PDB code: 6yso was solved by K.El Omari, N.Mohamad, K.Bountra, R.Duman, M.Romano, K.Schlegel, H.Kwong, V.Mykhaylyk, C.E.Olesen, J.V.Moller, M.Bublitz, K.Beis, A.Wagner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 64.59 / 3.13
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 131.140, 94.390, 135.110, 90.00, 107.05, 90.00
R / Rfree (%) 20.1 / 25.9

Other elements in 6yso:

The structure of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Vanadium (V) 2 atoms
Chlorine (Cl) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing (pdb code 6yso). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing, PDB code: 6yso:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6yso

Go back to Potassium Binding Sites List in 6yso
Potassium binding site 1 out of 2 in the Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1006

b:0.8
occ:1.00
O A:LEU711 2.5 86.8 1.0
OE1 A:GLN244 2.8 0.9 1.0
OE2 A:GLU732 2.8 81.0 1.0
OE1 A:GLU732 2.8 0.5 1.0
O A:ALA714 2.8 95.2 1.0
CD A:GLU732 3.2 92.6 1.0
O A:LYS712 3.2 99.6 1.0
CD A:GLN244 3.4 0.2 1.0
NE2 A:GLN244 3.5 0.5 1.0
CA A:LYS712 3.7 68.8 1.0
C A:LEU711 3.7 72.7 1.0
C A:LYS712 3.7 87.3 1.0
N A:GLY717 3.8 67.0 1.0
C A:ALA714 4.0 70.2 1.0
O A:ALA730 4.1 0.6 1.0
N A:LYS712 4.1 62.8 1.0
CA A:GLY717 4.3 71.2 1.0
C A:GLU715 4.5 76.1 1.0
C A:ILE716 4.5 61.0 1.0
N A:ILE716 4.5 80.4 1.0
O A:GLU715 4.5 90.8 1.0
N A:ALA714 4.7 74.6 1.0
CG A:GLU732 4.7 63.9 1.0
CG A:GLN244 4.7 0.6 1.0
N A:LYS713 4.7 84.3 1.0
CA A:ILE716 4.7 77.5 1.0
CA A:ALA714 4.8 69.0 1.0
CA A:LEU711 4.9 69.3 1.0
N A:GLU715 5.0 65.4 1.0
CB A:LYS712 5.0 67.3 1.0
CA A:GLU715 5.0 68.1 1.0
C A:LYS713 5.0 75.0 1.0

Potassium binding site 2 out of 2 in 6yso

Go back to Potassium Binding Sites List in 6yso
Potassium binding site 2 out of 2 in the Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the (Sr) CA2+-Atpase Solved By Vanadium Sad Phasing within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K2006

b:0.9
occ:1.00
O B:LEU711 2.7 0.7 1.0
OE1 B:GLN244 2.8 0.3 1.0
OE2 B:GLU732 2.8 0.6 1.0
OE1 B:GLU732 2.8 0.1 1.0
O B:ALA714 2.9 70.0 1.0
CD B:GLU732 3.1 0.9 1.0
O B:LYS712 3.3 0.3 1.0
N B:GLY717 3.5 0.7 1.0
CD B:GLN244 3.5 0.5 1.0
C B:LEU711 3.9 99.0 1.0
C B:LYS712 3.9 0.0 1.0
C B:ALA714 3.9 73.6 1.0
CA B:LYS712 4.0 0.2 1.0
CA B:GLY717 4.1 96.9 1.0
C B:ILE716 4.1 0.1 1.0
O B:GLU715 4.2 0.1 1.0
O B:ALA730 4.2 81.0 1.0
NE2 B:GLN244 4.2 0.1 1.0
C B:GLU715 4.3 89.8 1.0
CA B:ILE716 4.4 97.7 1.0
N B:ILE716 4.4 81.2 1.0
CG B:GLN244 4.4 0.4 1.0
N B:LYS712 4.4 0.0 1.0
N B:ALA714 4.5 79.3 1.0
CG B:GLU732 4.6 0.7 1.0
CA B:ALA714 4.6 78.7 1.0
CB B:ALA714 4.8 71.7 1.0
N B:GLU715 4.8 93.1 1.0
CA B:GLU715 5.0 99.4 1.0
N B:LYS713 5.0 85.9 1.0

Reference:

K.El Omari, N.Mohamad, K.Bountra, R.Duman, M.Romano, K.Schlegel, H.S.Kwong, V.Mykhaylyk, C.Olesen, J.V.Moller, M.Bublitz, K.Beis, A.Wagner. Experimental Phasing with Vanadium and Application to Nucleotide-Binding Membrane Proteins. Iucrj V. 7 1092 2020.
ISSN: ESSN 2052-2525
PubMed: 33209320
DOI: 10.1107/S2052252520012312
Page generated: Mon Dec 14 02:29:21 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy