Potassium in PDB 6xup: Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat

Protein crystallography data

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup was solved by S.Grazulis, M.Zaremba, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.72 / 1.90
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 51.798, 60.872, 101.718, 76.56, 75.59, 79.39
R / Rfree (%) 18.1 / 22.4

Other elements in 6xup:

The structure of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Arsenic (As) 2 atoms
Chlorine (Cl) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat (pdb code 6xup). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat, PDB code: 6xup:

Potassium binding site 1 out of 1 in 6xup

Go back to Potassium Binding Sites List in 6xup
Potassium binding site 1 out of 1 in the Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'- Patcgtggccacgat within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K516

b:77.7
occ:1.00
O A:HOH640 2.6 42.0 1.0
OH A:TYR88 2.8 41.6 1.0
O A:VAL114 3.1 35.5 1.0
CB A:ASN54 3.2 52.3 1.0
O A:HOH628 3.2 49.3 1.0
C A:LEU115 3.3 34.9 1.0
N A:PRO116 3.4 40.5 1.0
C A:VAL114 3.5 37.7 1.0
O A:LEU115 3.6 35.3 1.0
CA A:PRO116 3.7 38.6 1.0
CA A:LEU115 3.7 35.6 1.0
N A:ASN54 3.8 43.2 1.0
N A:LEU115 3.9 34.3 1.0
CZ A:TYR88 3.9 41.9 1.0
CB A:TYR141 3.9 38.9 1.0
CG1 A:VAL114 3.9 33.1 1.0
CD A:PRO116 3.9 40.0 1.0
OD1 A:ASN55 4.0 53.7 1.0
CG A:PRO116 4.1 43.8 1.0
CA A:ASN54 4.1 47.0 1.0
CB A:VAL114 4.2 36.7 1.0
CG A:ASN54 4.3 60.6 1.0
ND2 A:ASN54 4.4 48.7 1.0
CB A:PRO116 4.4 40.9 1.0
CA A:VAL114 4.5 34.1 1.0
C A:HIS53 4.6 40.0 1.0
CE2 A:TYR88 4.6 36.4 1.0
CA A:HIS53 4.6 36.8 1.0
CE1 A:TYR88 4.6 41.4 1.0
CG A:TYR141 4.6 40.7 1.0
CB A:HIS53 4.8 32.2 1.0
C A:ASN54 5.0 48.1 1.0
C A:PRO116 5.0 36.2 1.0

Reference:

E.Golovinas, E.Manakova, G.Sasnauskas, M.Zaremba. Archaeoglobus Fulgidus Argonaute Protein with Dna Oligoduplex 5'-Patcgtggccacgat To Be Published.
Page generated: Wed Mar 3 14:20:00 2021

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