Potassium in PDB 6xrq: Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus

The structure of Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus, PDB code: 6xrq was solved by Y.S.Zhang, G.N.Parkinson, D.G.Wei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.69 / 1.21
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	29.177, 43.974, 30.781, 90, 108.39, 90
R / Rfree (%)	19.9 / 21.7

The binding sites of Potassium atom in the Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus (pdb code 6xrq). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus, PDB code: 6xrq:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in the Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:K101 b:10.2 occ:1.00 O6 A:G6 2.6 11.2 1.0 O6 B:G6 2.7 10.4 1.0 O6 A:G1 2.7 10.8 1.0 O6 B:G1 2.7 10.2 1.0 O6 B:G7 2.7 10.4 0.5 O6 A:G7 2.8 11.0 1.0 O6 B:G2 2.9 10.2 1.0 O6 B:G7 2.9 10.0 0.5 O6 A:G2 2.9 10.5 1.0 K B:K102 3.4 10.5 1.0 C6 A:G1 3.6 10.9 1.0 C6 B:G1 3.6 9.6 1.0 C6 A:G6 3.6 12.4 1.0 C6 B:G6 3.6 10.6 1.0 C6 B:G7 3.7 10.5 0.5 C6 A:G7 3.7 10.3 1.0 C6 B:G7 3.7 10.6 0.5 C6 B:G2 3.7 10.2 1.0 C6 A:G2 3.8 11.8 1.0 N1 A:G1 3.8 11.1 1.0 N1 B:G1 3.9 9.6 1.0 N1 A:G6 3.9 11.6 1.0 N1 B:G6 3.9 9.8 1.0 N1 A:G7 4.0 10.7 1.0 N1 B:G2 4.1 10.1 1.0 N1 B:G7 4.1 10.7 0.5 N1 A:G2 4.1 11.1 1.0 N1 B:G7 4.1 10.6 0.5 C4 A:V8A102 4.7 10.3 1.0 C5 A:V8A102 4.7 10.1 1.0 C7 A:V8A102 4.8 11.1 1.0 C10 A:V8A102 4.8 10.2 1.0 C5 B:G7 4.8 10.8 0.5 C5 A:G1 4.8 12.0 1.0 C5 A:G7 4.9 10.7 1.0 C5 A:G6 4.9 12.3 1.0 C8 A:V8A102 4.9 10.6 1.0 C5 B:G1 4.9 11.9 1.0 C5 B:G7 4.9 11.1 0.5 C5 B:G2 4.9 10.2 1.0 C5 A:G2 4.9 12.2 1.0 C5 B:G6 5.0 10.2 1.0 C9 A:V8A102 5.0 10.4 1.0

Potassium binding site 2 out of 3 in the Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus within 5.0Å range: probe atom residue distance (Å) B Occ B:K102 b:10.5 occ:1.00 O6 A:G2 2.7 10.5 1.0 O6 A:G9 2.7 10.6 1.0 O6 B:G2 2.7 10.2 1.0 O6 B:G7 2.7 10.4 0.5 O6 A:G7 2.7 11.0 1.0 O6 B:G9 2.8 10.6 1.0 O6 A:G12 2.8 10.8 1.0 O6 B:G12 2.8 10.6 1.0 O6 B:G7 2.9 10.0 0.5 K B:K101 3.4 10.2 1.0 K A:K101 3.4 10.9 1.0 C6 A:G7 3.6 10.3 1.0 C6 A:G2 3.6 11.8 1.0 C6 A:G9 3.6 11.1 1.0 C6 B:G9 3.6 9.9 1.0 C6 A:G12 3.6 10.9 1.0 C6 B:G2 3.7 10.2 1.0 C6 B:G7 3.7 10.5 0.5 C6 B:G12 3.7 9.7 1.0 C6 B:G7 3.7 10.6 0.5 N1 A:G7 3.9 10.7 1.0 N1 B:G9 3.9 10.4 1.0 N1 B:G7 3.9 10.7 0.5 N1 A:G9 3.9 11.1 1.0 N1 A:G12 4.0 10.9 1.0 N1 B:G7 4.0 10.6 0.5 N1 A:G2 4.0 11.1 1.0 N1 B:G12 4.0 10.1 1.0 N1 B:G2 4.0 10.1 1.0 C5 A:G2 4.9 12.2 1.0 C5 A:G7 4.9 10.7 1.0 C5 B:G2 4.9 10.2 1.0 C5 A:G9 4.9 11.5 1.0 C5 A:G12 4.9 11.1 1.0 C5 B:G9 4.9 10.6 1.0 C5 B:G12 4.9 10.3 1.0 C5 B:G7 4.9 10.8 0.5

Potassium binding site 3 out of 3 in the Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:K101 b:10.9 occ:1.00 O6 A:G13 2.7 11.6 1.0 O6 A:G10 2.7 11.6 1.0 O6 B:G13 2.7 12.4 1.0 O6 B:G10 2.7 12.8 1.0 O6 B:G9 2.8 10.6 1.0 O6 A:G12 2.9 10.8 1.0 O6 B:G12 2.9 10.6 1.0 O6 A:G9 2.9 10.6 1.0 K B:K102 3.4 10.5 1.0 C6 A:G13 3.6 11.6 1.0 C6 A:G10 3.6 11.4 1.0 C6 B:G10 3.6 11.8 1.0 C6 B:G13 3.7 11.1 1.0 C6 B:G9 3.7 9.9 1.0 C6 A:G12 3.7 10.9 1.0 C6 B:G12 3.7 9.7 1.0 C6 A:G9 3.8 11.1 1.0 N1 A:G10 3.9 12.5 1.0 N1 A:G13 3.9 12.4 1.0 N1 B:G13 3.9 12.7 1.0 N1 B:G10 3.9 12.0 1.0 N1 A:G12 3.9 10.9 1.0 N1 B:G9 4.0 10.4 1.0 N1 B:G12 4.0 10.1 1.0 N1 A:G9 4.1 11.1 1.0 C5 A:V8A103 4.8 12.2 1.0 C6 A:V8A103 4.8 11.6 1.0 C5 B:G9 4.9 10.6 1.0 C12 A:V8A103 4.9 12.4 1.0 C5 A:G13 4.9 12.3 1.0 C5 A:G10 4.9 12.4 1.0 N1 A:V8A103 4.9 12.4 1.0 C11 A:V8A103 4.9 13.6 1.0 C10 A:V8A103 4.9 12.8 1.0 C5 B:G12 4.9 10.3 1.0 C5 B:G10 4.9 11.6 1.0 C5 A:G12 4.9 11.1 1.0 C5 B:G13 5.0 13.0 1.0 C5 A:G9 5.0 11.5 1.0

Y.S.Zhang, G.N.Parkinson, D.G.Wei. Structural Descriptions of Ligand Interactions to Dna and Rna Quadruplexes Folded From the Non-Coding Region of Pseudorabies Virus To Be Published.