Potassium in PDB 6w9t: Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Enzymatic activity of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
All present enzymatic activity of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06:
3.4.21.92;
Protein crystallography data
The structure of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06, PDB code: 6w9t
was solved by
M.F.Mabanglo,
W.A.Houry,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
97.33 /
1.64
|
Space group
|
P 2 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.328,
119.150,
127.763,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.7 /
28.2
|
Other elements in 6w9t:
The structure of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
(pdb code 6w9t). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 7 binding sites of Potassium where determined in the
Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06, PDB code: 6w9t:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
Potassium binding site 1 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 1 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K301
b:22.9
occ:1.00
|
O
|
A:MET85
|
2.6
|
19.1
|
1.0
|
O
|
A:PRO90
|
2.7
|
24.4
|
1.0
|
O
|
A:HOH431
|
2.8
|
29.4
|
1.0
|
O
|
A:HOH451
|
2.9
|
20.0
|
1.0
|
O
|
A:ILE88
|
2.9
|
27.7
|
1.0
|
O
|
A:HOH481
|
3.1
|
36.8
|
1.0
|
HG13
|
A:ILE88
|
3.4
|
25.0
|
1.0
|
HG23
|
A:VAL92
|
3.5
|
15.4
|
1.0
|
HA
|
A:ASP91
|
3.6
|
21.7
|
1.0
|
HA
|
A:ASN86
|
3.6
|
26.1
|
1.0
|
C
|
A:PRO90
|
3.7
|
24.1
|
1.0
|
C
|
A:MET85
|
3.8
|
20.4
|
1.0
|
HG12
|
A:ILE88
|
3.8
|
25.0
|
1.0
|
C
|
A:ILE88
|
3.9
|
19.0
|
1.0
|
H
|
A:VAL92
|
4.0
|
24.3
|
1.0
|
O
|
A:ASN86
|
4.1
|
24.5
|
1.0
|
CG1
|
A:ILE88
|
4.1
|
20.9
|
1.0
|
O
|
A:LYS89
|
4.1
|
22.7
|
1.0
|
CA
|
A:ASN86
|
4.2
|
21.7
|
1.0
|
C
|
A:ASN86
|
4.3
|
18.2
|
1.0
|
CA
|
A:ASP91
|
4.3
|
18.1
|
1.0
|
N
|
A:ASP91
|
4.3
|
21.0
|
1.0
|
C
|
A:LYS89
|
4.3
|
26.7
|
1.0
|
H
|
A:ILE88
|
4.4
|
19.6
|
1.0
|
CG2
|
A:VAL92
|
4.5
|
12.8
|
1.0
|
N
|
A:VAL92
|
4.5
|
20.2
|
1.0
|
N
|
A:ASN86
|
4.5
|
18.4
|
1.0
|
OE1
|
A:GLU112
|
4.6
|
26.4
|
1.0
|
N
|
A:ILE88
|
4.6
|
16.3
|
1.0
|
N
|
A:PRO90
|
4.7
|
19.1
|
1.0
|
HD11
|
A:ILE88
|
4.7
|
22.1
|
1.0
|
O
|
A:HOH435
|
4.7
|
22.6
|
1.0
|
CA
|
A:ILE88
|
4.7
|
23.0
|
1.0
|
CA
|
A:PRO90
|
4.8
|
20.0
|
1.0
|
HA
|
A:MET85
|
4.8
|
24.9
|
1.0
|
C
|
A:ASP91
|
4.8
|
20.7
|
1.0
|
HA
|
A:LYS89
|
4.8
|
28.4
|
1.0
|
HG21
|
A:VAL92
|
4.8
|
15.4
|
1.0
|
N
|
A:LYS89
|
4.9
|
22.6
|
1.0
|
HG22
|
A:VAL92
|
4.9
|
15.4
|
1.0
|
CA
|
A:MET85
|
4.9
|
20.8
|
1.0
|
HD2
|
A:PRO90
|
4.9
|
25.7
|
1.0
|
CA
|
A:LYS89
|
4.9
|
23.7
|
1.0
|
|
Potassium binding site 2 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 2 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K301
b:29.2
occ:1.00
|
O
|
B:MET85
|
2.5
|
27.8
|
1.0
|
O
|
B:HOH473
|
2.6
|
41.6
|
1.0
|
O
|
B:PRO90
|
2.6
|
28.7
|
1.0
|
O
|
B:HOH445
|
2.7
|
22.1
|
1.0
|
O
|
B:HOH405
|
3.1
|
31.2
|
1.0
|
O
|
B:ILE88
|
3.1
|
29.2
|
1.0
|
HA
|
B:ASN86
|
3.5
|
45.8
|
1.0
|
HG13
|
B:ILE88
|
3.6
|
34.7
|
1.0
|
HA
|
B:ASP91
|
3.6
|
35.3
|
1.0
|
C
|
B:PRO90
|
3.7
|
35.9
|
1.0
|
C
|
B:MET85
|
3.8
|
30.5
|
1.0
|
HG23
|
B:VAL92
|
3.9
|
32.2
|
1.0
|
HG12
|
B:ILE88
|
3.9
|
34.7
|
1.0
|
H
|
B:VAL92
|
3.9
|
25.6
|
1.0
|
C
|
B:ILE88
|
4.1
|
25.3
|
1.0
|
O
|
B:LYS89
|
4.1
|
35.2
|
1.0
|
O
|
B:ASN86
|
4.2
|
30.1
|
1.0
|
CG1
|
B:ILE88
|
4.2
|
28.9
|
1.0
|
CA
|
B:ASN86
|
4.2
|
38.1
|
1.0
|
O
|
B:HOH489
|
4.2
|
43.8
|
1.0
|
C
|
B:ASN86
|
4.3
|
27.6
|
1.0
|
CA
|
B:ASP91
|
4.3
|
29.4
|
1.0
|
N
|
B:ASP91
|
4.3
|
23.1
|
1.0
|
C
|
B:LYS89
|
4.3
|
24.8
|
1.0
|
OE1
|
B:GLU112
|
4.5
|
30.2
|
1.0
|
N
|
B:ASN86
|
4.5
|
29.9
|
1.0
|
N
|
B:VAL92
|
4.5
|
21.3
|
1.0
|
H
|
B:ILE88
|
4.6
|
36.0
|
1.0
|
N
|
B:PRO90
|
4.6
|
27.3
|
1.0
|
N
|
B:ILE88
|
4.7
|
30.0
|
1.0
|
CG2
|
B:VAL92
|
4.7
|
26.8
|
1.0
|
O
|
B:HOH475
|
4.7
|
37.9
|
1.0
|
CA
|
B:PRO90
|
4.7
|
24.1
|
1.0
|
HA
|
B:MET85
|
4.8
|
34.1
|
1.0
|
C
|
B:ASP91
|
4.8
|
25.2
|
1.0
|
HA
|
B:LYS89
|
4.8
|
40.0
|
1.0
|
HD11
|
B:ILE88
|
4.9
|
26.8
|
1.0
|
CA
|
B:MET85
|
4.9
|
28.4
|
1.0
|
HG21
|
B:VAL92
|
4.9
|
32.2
|
1.0
|
CA
|
B:ILE88
|
4.9
|
25.7
|
1.0
|
HB
|
B:VAL92
|
4.9
|
25.5
|
1.0
|
HB3
|
B:MET85
|
4.9
|
25.6
|
1.0
|
N
|
B:LYS89
|
4.9
|
26.1
|
1.0
|
CA
|
B:LYS89
|
5.0
|
33.3
|
1.0
|
|
Potassium binding site 3 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 3 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K301
b:35.4
occ:1.00
|
O
|
C:MET85
|
2.6
|
33.7
|
1.0
|
O
|
C:PRO90
|
2.7
|
31.3
|
1.0
|
O
|
C:ILE88
|
2.8
|
27.8
|
1.0
|
O
|
C:HOH467
|
2.9
|
43.6
|
1.0
|
O
|
C:HOH416
|
2.9
|
35.9
|
1.0
|
HG13
|
C:ILE88
|
3.5
|
31.8
|
1.0
|
HA
|
C:ASP91
|
3.6
|
40.9
|
1.0
|
C
|
C:PRO90
|
3.7
|
29.9
|
1.0
|
HA
|
C:ASN86
|
3.7
|
34.8
|
1.0
|
HG23
|
C:VAL92
|
3.8
|
32.7
|
1.0
|
C
|
C:MET85
|
3.8
|
29.8
|
1.0
|
C
|
C:ILE88
|
3.9
|
28.6
|
1.0
|
HG12
|
C:ILE88
|
3.9
|
31.8
|
1.0
|
H
|
C:VAL92
|
4.0
|
50.2
|
1.0
|
O
|
C:LYS89
|
4.0
|
44.5
|
1.0
|
CG1
|
C:ILE88
|
4.2
|
26.4
|
1.0
|
C
|
C:LYS89
|
4.2
|
28.8
|
1.0
|
OE1
|
C:GLU112
|
4.2
|
44.4
|
1.0
|
O
|
C:ASN86
|
4.2
|
38.2
|
1.0
|
CA
|
C:ASP91
|
4.3
|
34.0
|
1.0
|
CA
|
C:ASN86
|
4.3
|
29.0
|
1.0
|
C
|
C:ASN86
|
4.3
|
26.7
|
1.0
|
N
|
C:ASP91
|
4.3
|
32.9
|
1.0
|
H
|
C:ILE88
|
4.5
|
52.7
|
1.0
|
N
|
C:VAL92
|
4.5
|
41.9
|
1.0
|
N
|
C:ASN86
|
4.5
|
28.5
|
1.0
|
N
|
C:PRO90
|
4.6
|
28.1
|
1.0
|
N
|
C:ILE88
|
4.6
|
43.9
|
1.0
|
HA
|
C:LYS89
|
4.6
|
34.8
|
1.0
|
CG2
|
C:VAL92
|
4.7
|
27.2
|
1.0
|
HA
|
C:MET85
|
4.7
|
48.6
|
1.0
|
C
|
C:ASP91
|
4.7
|
53.8
|
1.0
|
CA
|
C:ILE88
|
4.7
|
35.6
|
1.0
|
O
|
C:HOH414
|
4.7
|
32.5
|
1.0
|
CA
|
C:PRO90
|
4.8
|
31.8
|
1.0
|
N
|
C:LYS89
|
4.8
|
35.2
|
1.0
|
CA
|
C:LYS89
|
4.8
|
29.1
|
1.0
|
HD11
|
C:ILE88
|
4.8
|
41.9
|
1.0
|
CA
|
C:MET85
|
4.9
|
40.5
|
1.0
|
HG21
|
C:VAL92
|
4.9
|
32.7
|
1.0
|
|
Potassium binding site 4 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 4 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K301
b:30.1
occ:1.00
|
O
|
D:PRO90
|
2.6
|
30.3
|
1.0
|
O
|
D:HOH449
|
2.7
|
28.5
|
1.0
|
O
|
D:MET85
|
2.7
|
22.4
|
1.0
|
O
|
D:ILE88
|
2.7
|
28.9
|
1.0
|
HG13
|
D:ILE88
|
3.3
|
31.3
|
1.0
|
HA
|
D:ASP91
|
3.4
|
60.7
|
1.0
|
HG23
|
D:VAL92
|
3.6
|
42.9
|
1.0
|
C
|
D:PRO90
|
3.6
|
33.6
|
1.0
|
O
|
D:HOH469
|
3.7
|
39.6
|
1.0
|
HG12
|
D:ILE88
|
3.8
|
31.3
|
1.0
|
H
|
D:VAL92
|
3.8
|
35.6
|
1.0
|
HA
|
D:ASN86
|
3.8
|
34.6
|
1.0
|
C
|
D:ILE88
|
3.9
|
35.5
|
1.0
|
C
|
D:MET85
|
3.9
|
39.4
|
1.0
|
O
|
D:LYS89
|
4.0
|
34.0
|
1.0
|
CG1
|
D:ILE88
|
4.0
|
26.1
|
1.0
|
CA
|
D:ASP91
|
4.1
|
50.6
|
1.0
|
O
|
D:ASN86
|
4.2
|
30.7
|
1.0
|
N
|
D:ASP91
|
4.2
|
40.4
|
1.0
|
C
|
D:LYS89
|
4.3
|
35.0
|
1.0
|
N
|
D:VAL92
|
4.4
|
29.7
|
1.0
|
C
|
D:ASN86
|
4.4
|
27.4
|
1.0
|
CA
|
D:ASN86
|
4.4
|
28.8
|
1.0
|
H
|
D:ILE88
|
4.5
|
39.1
|
1.0
|
CG2
|
D:VAL92
|
4.6
|
35.7
|
1.0
|
N
|
D:ILE88
|
4.6
|
32.5
|
1.0
|
OE1
|
D:GLU112
|
4.6
|
36.0
|
1.0
|
C
|
D:ASP91
|
4.6
|
38.6
|
1.0
|
HD11
|
D:ILE88
|
4.6
|
38.5
|
1.0
|
O
|
D:HOH464
|
4.6
|
26.1
|
1.0
|
N
|
D:PRO90
|
4.7
|
35.1
|
1.0
|
HA
|
D:LYS89
|
4.7
|
53.9
|
1.0
|
N
|
D:ASN86
|
4.7
|
22.7
|
1.0
|
CA
|
D:ILE88
|
4.7
|
28.5
|
1.0
|
CA
|
D:PRO90
|
4.8
|
33.9
|
1.0
|
N
|
D:LYS89
|
4.8
|
33.2
|
1.0
|
HA
|
D:MET85
|
4.8
|
36.6
|
1.0
|
OD1
|
D:ASP91
|
4.9
|
30.0
|
1.0
|
HG21
|
D:VAL92
|
4.9
|
42.9
|
1.0
|
CA
|
D:LYS89
|
4.9
|
44.9
|
1.0
|
CD1
|
D:ILE88
|
5.0
|
32.1
|
1.0
|
H
|
D:ASP91
|
5.0
|
48.5
|
1.0
|
|
Potassium binding site 5 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 5 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K301
b:26.6
occ:1.00
|
O
|
E:MET85
|
2.7
|
25.7
|
1.0
|
O
|
E:PRO90
|
2.7
|
23.2
|
1.0
|
O
|
E:ILE88
|
2.8
|
22.9
|
1.0
|
O
|
E:HOH415
|
2.8
|
25.2
|
1.0
|
O
|
E:HOH474
|
2.8
|
42.2
|
1.0
|
O
|
E:HOH473
|
2.9
|
35.9
|
1.0
|
HG23
|
E:VAL92
|
3.5
|
25.4
|
1.0
|
HG13
|
E:ILE88
|
3.5
|
27.0
|
1.0
|
HA
|
E:ASP91
|
3.6
|
30.7
|
1.0
|
HA
|
E:ASN86
|
3.6
|
28.9
|
1.0
|
C
|
E:PRO90
|
3.7
|
24.8
|
1.0
|
HG12
|
E:ILE88
|
3.9
|
27.0
|
1.0
|
C
|
E:MET85
|
3.9
|
27.7
|
1.0
|
C
|
E:ILE88
|
3.9
|
34.4
|
1.0
|
H
|
E:VAL92
|
3.9
|
27.2
|
1.0
|
O
|
E:LYS89
|
4.0
|
32.2
|
1.0
|
CG1
|
E:ILE88
|
4.1
|
22.5
|
1.0
|
O
|
E:ASN86
|
4.2
|
28.9
|
1.0
|
C
|
E:LYS89
|
4.2
|
23.7
|
1.0
|
CA
|
E:ASN86
|
4.3
|
24.1
|
1.0
|
CA
|
E:ASP91
|
4.3
|
25.6
|
1.0
|
C
|
E:ASN86
|
4.3
|
28.1
|
1.0
|
N
|
E:ASP91
|
4.3
|
25.3
|
1.0
|
OE1
|
E:GLU112
|
4.4
|
37.4
|
1.0
|
N
|
E:VAL92
|
4.4
|
22.6
|
1.0
|
CG2
|
E:VAL92
|
4.4
|
21.2
|
1.0
|
H
|
E:ILE88
|
4.5
|
32.0
|
1.0
|
N
|
E:ASN86
|
4.6
|
27.5
|
1.0
|
N
|
E:PRO90
|
4.6
|
30.6
|
1.0
|
N
|
E:ILE88
|
4.6
|
26.6
|
1.0
|
O
|
E:HOH439
|
4.7
|
26.0
|
1.0
|
HA
|
E:LYS89
|
4.7
|
33.6
|
1.0
|
C
|
E:ASP91
|
4.7
|
24.2
|
1.0
|
CA
|
E:ILE88
|
4.7
|
31.3
|
1.0
|
CA
|
E:PRO90
|
4.8
|
31.6
|
1.0
|
N
|
E:LYS89
|
4.8
|
25.1
|
1.0
|
HG21
|
E:VAL92
|
4.8
|
25.4
|
1.0
|
HD11
|
E:ILE88
|
4.8
|
26.1
|
1.0
|
CA
|
E:LYS89
|
4.8
|
27.9
|
1.0
|
HA
|
E:MET85
|
4.9
|
24.1
|
1.0
|
HG22
|
E:VAL92
|
4.9
|
25.4
|
1.0
|
HB
|
E:VAL92
|
4.9
|
39.7
|
1.0
|
CA
|
E:MET85
|
5.0
|
20.0
|
1.0
|
|
Potassium binding site 6 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 6 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K302
b:27.7
occ:1.00
|
O
|
F:MET85
|
2.6
|
19.8
|
1.0
|
O
|
F:ILE88
|
2.7
|
25.3
|
1.0
|
O
|
F:PRO90
|
2.8
|
27.2
|
1.0
|
O
|
F:HOH411
|
2.8
|
39.1
|
1.0
|
O
|
F:HOH447
|
2.8
|
31.6
|
1.0
|
O
|
F:HOH484
|
3.1
|
64.8
|
1.0
|
HG13
|
F:ILE88
|
3.4
|
30.1
|
1.0
|
HA
|
F:ASN86
|
3.5
|
28.5
|
1.0
|
HG23
|
F:VAL92
|
3.5
|
37.8
|
1.0
|
HA
|
F:ASP91
|
3.8
|
38.0
|
1.0
|
C
|
F:MET85
|
3.8
|
24.8
|
1.0
|
C
|
F:PRO90
|
3.8
|
26.4
|
1.0
|
C
|
F:ILE88
|
3.9
|
28.4
|
1.0
|
HG12
|
F:ILE88
|
3.9
|
30.1
|
1.0
|
H
|
F:VAL92
|
4.0
|
31.8
|
1.0
|
O
|
F:ASN86
|
4.1
|
31.1
|
1.0
|
CG1
|
F:ILE88
|
4.1
|
25.1
|
1.0
|
O
|
F:LYS89
|
4.1
|
23.9
|
1.0
|
CA
|
F:ASN86
|
4.1
|
23.8
|
1.0
|
C
|
F:ASN86
|
4.2
|
35.8
|
1.0
|
C
|
F:LYS89
|
4.4
|
22.9
|
1.0
|
CG2
|
F:VAL92
|
4.4
|
31.5
|
1.0
|
N
|
F:ASN86
|
4.4
|
16.9
|
1.0
|
H
|
F:ILE88
|
4.5
|
25.8
|
1.0
|
CA
|
F:ASP91
|
4.5
|
31.6
|
1.0
|
OE1
|
F:GLU112
|
4.5
|
28.4
|
1.0
|
N
|
F:VAL92
|
4.5
|
26.5
|
1.0
|
N
|
F:ASP91
|
4.5
|
28.7
|
1.0
|
N
|
F:ILE88
|
4.6
|
21.5
|
1.0
|
HG21
|
F:VAL92
|
4.6
|
37.8
|
1.0
|
HD11
|
F:ILE88
|
4.7
|
23.4
|
1.0
|
N
|
F:PRO90
|
4.7
|
24.4
|
1.0
|
HA
|
F:LYS89
|
4.7
|
25.0
|
1.0
|
CA
|
F:ILE88
|
4.7
|
28.4
|
1.0
|
N
|
F:LYS89
|
4.8
|
20.4
|
1.0
|
HB
|
F:VAL92
|
4.8
|
20.8
|
1.0
|
C
|
F:ASP91
|
4.8
|
22.3
|
1.0
|
HA
|
F:MET85
|
4.9
|
17.3
|
1.0
|
CA
|
F:PRO90
|
4.9
|
20.6
|
1.0
|
CA
|
F:LYS89
|
4.9
|
20.8
|
1.0
|
HG22
|
F:VAL92
|
5.0
|
37.8
|
1.0
|
CA
|
F:MET85
|
5.0
|
14.4
|
1.0
|
N
|
F:PHE87
|
5.0
|
28.2
|
1.0
|
|
Potassium binding site 7 out
of 7 in 6w9t
Go back to
Potassium Binding Sites List in 6w9t
Potassium binding site 7 out
of 7 in the Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of Neisseria Meningitidis Clpp Protease Complex with Small Molecule Activator ACP1-06 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K301
b:21.9
occ:1.00
|
O
|
G:PRO90
|
2.6
|
19.5
|
1.0
|
O
|
G:HOH466
|
2.7
|
28.5
|
1.0
|
O
|
G:MET85
|
2.7
|
15.7
|
1.0
|
O
|
G:HOH495
|
2.8
|
29.3
|
1.0
|
O
|
G:ILE88
|
2.8
|
19.3
|
1.0
|
O
|
G:HOH428
|
2.9
|
23.4
|
1.0
|
HA
|
G:ASP91
|
3.5
|
22.6
|
1.0
|
HG23
|
G:VAL92
|
3.5
|
22.5
|
1.0
|
HG12
|
G:ILE88
|
3.6
|
17.2
|
1.0
|
HG13
|
G:ILE88
|
3.6
|
17.2
|
1.0
|
C
|
G:PRO90
|
3.7
|
15.9
|
1.0
|
HA
|
G:ASN86
|
3.7
|
19.4
|
1.0
|
H
|
G:VAL92
|
3.9
|
28.8
|
1.0
|
C
|
G:ILE88
|
3.9
|
15.4
|
1.0
|
C
|
G:MET85
|
3.9
|
14.1
|
1.0
|
O
|
G:HOH436
|
3.9
|
37.9
|
1.0
|
CG1
|
G:ILE88
|
4.1
|
14.3
|
1.0
|
O
|
G:LYS89
|
4.1
|
21.1
|
1.0
|
O
|
G:HOH498
|
4.2
|
52.7
|
1.0
|
CA
|
G:ASP91
|
4.3
|
18.8
|
1.0
|
C
|
G:LYS89
|
4.3
|
18.1
|
1.0
|
N
|
G:ASP91
|
4.3
|
22.4
|
1.0
|
O
|
G:ASN86
|
4.4
|
23.3
|
1.0
|
CA
|
G:ASN86
|
4.4
|
16.2
|
1.0
|
N
|
G:VAL92
|
4.4
|
24.0
|
1.0
|
OE1
|
G:GLU112
|
4.4
|
21.8
|
1.0
|
C
|
G:ASN86
|
4.4
|
24.4
|
1.0
|
H
|
G:ILE88
|
4.5
|
20.3
|
1.0
|
CG2
|
G:VAL92
|
4.5
|
18.7
|
1.0
|
O
|
G:HOH494
|
4.5
|
49.7
|
1.0
|
N
|
G:ILE88
|
4.6
|
16.9
|
1.0
|
N
|
G:PRO90
|
4.6
|
16.8
|
1.0
|
O
|
G:HOH469
|
4.6
|
19.3
|
1.0
|
N
|
G:ASN86
|
4.6
|
14.8
|
1.0
|
C
|
G:ASP91
|
4.7
|
22.4
|
1.0
|
HA
|
G:LYS89
|
4.7
|
20.2
|
1.0
|
CA
|
G:ILE88
|
4.7
|
14.5
|
1.0
|
CA
|
G:PRO90
|
4.7
|
27.3
|
1.0
|
HD11
|
G:ILE88
|
4.7
|
28.3
|
1.0
|
HA
|
G:MET85
|
4.8
|
18.5
|
1.0
|
N
|
G:LYS89
|
4.8
|
18.6
|
1.0
|
HG22
|
G:VAL92
|
4.9
|
22.5
|
1.0
|
HG21
|
G:VAL92
|
4.9
|
22.5
|
1.0
|
O
|
G:HOH515
|
4.9
|
60.4
|
1.0
|
CA
|
G:LYS89
|
4.9
|
16.9
|
1.0
|
HB
|
G:VAL92
|
5.0
|
15.1
|
1.0
|
|
Reference:
G.Binepal,
M.F.Mabanglo,
J.D.Goodreid,
E.Leung,
M.M.Barghash,
K.S.Wong,
F.Lin,
M.Cossette,
J.Bansagi,
B.Song,
V.H.Balasco Serrao,
E.F.Pai,
R.A.Batey,
S.D.Gray-Owen,
W.A.Houry.
Development of Antibiotics That Dysregulate the Neisserial Clpp Protease. Acs Infect Dis. 2020.
ISSN: ESSN 2373-8227
PubMed: 33237740
DOI: 10.1021/ACSINFECDIS.0C00599
Page generated: Mon Aug 12 18:12:42 2024
|