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Potassium in PDB 6uij: Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate
Enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate
All present enzymatic activity of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate:
3.5.1.48; 3.5.1.62;
3.5.1.48; 3.5.1.62;
Protein crystallography data
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate, PDB code: 6uij
was solved by
C.J.Herbst-Gervasoni,
D.W.Christianson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 45.83 / 2.90 |
| Space group | P 31 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 80.780, 80.780, 242.602, 90.00, 90.00, 120.00 |
| R / Rfree (%) | 20.3 / 24.9 |
Other elements in 6uij:
The structure of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate also contains other interesting chemical elements:
| Zinc | (Zn) | 1 atom |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate
(pdb code 6uij). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate, PDB code: 6uij:
Jump to Potassium binding site number: 1; 2;
In total 2 binding sites of Potassium where determined in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate, PDB code: 6uij:
Jump to Potassium binding site number: 1; 2;
Potassium binding site 1 out of 2 in 6uij
Go back to
Potassium Binding Sites List in 6uij
Potassium binding site 1 out
of 2 in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate within 5.0Å range:
|
Potassium binding site 2 out of 2 in 6uij
Go back to
Potassium Binding Sites List in 6uij
Potassium binding site 2 out
of 2 in the Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Danio Rerio Histone Deacetylase 10 in Complex with S-{5-[(3-Aminopropyl)Amino]Pentyl} Thioacetate within 5.0Å range:
|
Reference:
C.J.Herbst-Gervasoni,
D.W.Christianson.
Binding of N8-Acetylspermidine Analogues to Histone Deacetylase 10 Reveals Molecular Strategies For Blocking Polyamine Deacetylation. Biochemistry 2019.
ISSN: ISSN 0006-2960
PubMed: 31746596
DOI: 10.1021/ACS.BIOCHEM.9B00906
Page generated: Mon Aug 12 17:49:18 2024
ISSN: ISSN 0006-2960
PubMed: 31746596
DOI: 10.1021/ACS.BIOCHEM.9B00906
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