Potassium in PDB 6u9t: Wild-Type Mthk Pore in 50 Mm K+

Protein crystallography data

The structure of Wild-Type Mthk Pore in 50 Mm K+, PDB code: 6u9t was solved by D.J.Posson, C.M.Nimigean, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.90 / 1.55
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 63.811, 63.811, 44.050, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21

Potassium Binding Sites:

The binding sites of Potassium atom in the Wild-Type Mthk Pore in 50 Mm K+ (pdb code 6u9t). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Wild-Type Mthk Pore in 50 Mm K+, PDB code: 6u9t:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 6u9t

Go back to Potassium Binding Sites List in 6u9t
Potassium binding site 1 out of 5 in the Wild-Type Mthk Pore in 50 Mm K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Wild-Type Mthk Pore in 50 Mm K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:18.7
occ:0.20
O A:GLY61 2.8 16.9 1.0
O A:TYR62 2.9 16.6 1.0
K A:K102 3.0 19.6 0.1
C A:TYR62 3.4 16.1 1.0
C A:GLY61 3.9 16.9 1.0
CA A:TYR62 3.9 16.0 1.0
N A:GLY63 4.3 17.6 1.0
N A:TYR62 4.4 15.6 1.0
CA A:GLY63 4.7 18.1 1.0
O A:HOH211 4.8 29.9 1.0

Potassium binding site 2 out of 5 in 6u9t

Go back to Potassium Binding Sites List in 6u9t
Potassium binding site 2 out of 5 in the Wild-Type Mthk Pore in 50 Mm K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Wild-Type Mthk Pore in 50 Mm K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:19.6
occ:0.12
K A:K103 2.8 18.6 0.2
O A:GLY61 2.8 16.9 1.0
O A:VAL60 2.9 15.7 1.0
K A:K101 3.0 18.7 0.2
C A:GLY61 3.5 16.9 1.0
CA A:GLY61 4.0 16.7 1.0
C A:VAL60 4.0 15.5 1.0
N A:TYR62 4.4 15.6 1.0
N A:GLY61 4.5 17.4 1.0
CA A:TYR62 4.8 16.0 1.0

Potassium binding site 3 out of 5 in 6u9t

Go back to Potassium Binding Sites List in 6u9t
Potassium binding site 3 out of 5 in the Wild-Type Mthk Pore in 50 Mm K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Wild-Type Mthk Pore in 50 Mm K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K103

b:18.6
occ:0.24
O A:VAL60 2.7 15.7 1.0
K A:K102 2.8 19.6 0.1
O A:THR59 2.9 17.8 1.0
C A:VAL60 3.5 15.5 1.0
K A:K104 3.6 18.6 0.2
C A:THR59 4.0 17.4 1.0
CA A:VAL60 4.1 16.2 1.0
N A:GLY61 4.4 17.4 1.0
N A:VAL60 4.5 15.5 1.0
CA A:GLY61 4.6 16.7 1.0
O A:GLY61 4.8 16.9 1.0
C A:GLY61 5.0 16.9 1.0

Potassium binding site 4 out of 5 in 6u9t

Go back to Potassium Binding Sites List in 6u9t
Potassium binding site 4 out of 5 in the Wild-Type Mthk Pore in 50 Mm K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Wild-Type Mthk Pore in 50 Mm K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K104

b:18.6
occ:0.25
O A:THR59 2.8 17.8 1.0
OG1 A:THR59 2.8 18.8 1.0
CB A:THR59 3.4 17.9 1.0
K A:K103 3.6 18.6 0.2
C A:THR59 3.7 17.4 1.0
CA A:THR59 4.2 17.1 1.0
CG2 A:THR59 4.7 18.1 1.0
N A:VAL60 4.7 15.5 1.0

Potassium binding site 5 out of 5 in 6u9t

Go back to Potassium Binding Sites List in 6u9t
Potassium binding site 5 out of 5 in the Wild-Type Mthk Pore in 50 Mm K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Wild-Type Mthk Pore in 50 Mm K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K105

b:38.4
occ:0.12
O A:HOH231 3.0 41.3 1.0

Reference:

C.Boiteux, D.J.Posson, T.W.Allen, C.M.Nimigean. Selectivity Filter Ion Binding Affinity Determines Inactivation in A Potassium Channel. Proc.Natl.Acad.Sci.Usa V. 117 29968 2020.
ISSN: ESSN 1091-6490
PubMed: 33154158
DOI: 10.1073/PNAS.2009624117
Page generated: Mon Dec 14 01:44:03 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy