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Potassium in PDB 6tmu: Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II

Protein crystallography data

The structure of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II, PDB code: 6tmu was solved by A.Bracher, S.S.Paul, H.Wang, N.Wischnewski, F.U.Hartl, M.Hayer-Hartl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.54
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 145.516, 151.461, 261.347, 90.00, 90.00, 90.00
R / Rfree (%) 25 / 27.5

Other elements in 6tmu:

The structure of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II (pdb code 6tmu). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II, PDB code: 6tmu:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 6tmu

Go back to Potassium Binding Sites List in 6tmu
Potassium binding site 1 out of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K602

b:0.2
occ:1.00
O1A A:ATP603 2.5 0.4 1.0
O1G A:ATP603 2.8 0.1 1.0
O A:THR30 3.1 0.9 1.0
O A:LYS50 3.3 0.5 1.0
PA A:ATP603 3.3 0.8 1.0
O3A A:ATP603 3.5 0.8 1.0
O2A A:ATP603 3.7 0.8 1.0
O3G A:ATP603 3.7 0.4 1.0
PG A:ATP603 3.8 0.4 1.0
OG1 A:THR30 3.9 0.1 1.0
N A:GLY52 4.1 0.9 1.0
C A:THR30 4.1 0.6 1.0
OG1 A:THR89 4.3 0.2 1.0
C A:LYS50 4.4 0.5 1.0
CA A:MET31 4.5 0.1 1.0
NZ A:LYS50 4.6 1.0 1.0
N A:GLY32 4.6 0.8 1.0
CB A:THR30 4.6 0.1 1.0
O A:GLY32 4.6 0.2 1.0
CA A:ASP51 4.6 0.7 1.0
O3B A:ATP603 4.8 0.1 1.0
O5' A:ATP603 4.8 0.0 1.0
CA A:GLY52 4.8 0.8 1.0
N A:MET31 4.8 0.4 1.0
PB A:ATP603 4.8 0.4 1.0
C A:ASP51 4.9 0.6 1.0
O2G A:ATP603 4.9 0.7 1.0
C A:MET31 5.0 0.1 1.0
CG A:LYS50 5.0 0.9 1.0

Potassium binding site 2 out of 4 in 6tmu

Go back to Potassium Binding Sites List in 6tmu
Potassium binding site 2 out of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K602

b:0.5
occ:1.00
O1A C:ATP603 2.7 0.5 1.0
O1G C:ATP603 3.0 0.3 1.0
O C:THR30 3.1 0.3 1.0
O C:LYS50 3.3 0.8 1.0
PA C:ATP603 3.5 0.2 1.0
O3A C:ATP603 3.6 0.9 1.0
O3G C:ATP603 3.7 0.4 1.0
O2A C:ATP603 3.8 0.3 1.0
PG C:ATP603 3.9 0.8 1.0
OG1 C:THR30 4.0 0.3 1.0
C C:THR30 4.1 0.9 1.0
N C:GLY52 4.1 0.1 1.0
C C:LYS50 4.4 0.4 1.0
OG1 C:THR89 4.4 0.3 1.0
NZ C:LYS50 4.5 0.0 1.0
O C:GLY32 4.5 0.7 1.0
CA C:MET31 4.5 0.8 1.0
N C:GLY32 4.5 0.2 1.0
CB C:THR30 4.6 0.6 1.0
CA C:ASP51 4.7 0.2 1.0
N C:MET31 4.8 0.1 1.0
O3B C:ATP603 4.9 0.2 1.0
CA C:GLY52 4.9 0.5 1.0
C C:MET31 4.9 0.6 1.0
C C:ASP51 4.9 0.2 1.0
CG C:LYS50 4.9 0.6 1.0
PB C:ATP603 4.9 0.4 1.0

Potassium binding site 3 out of 4 in 6tmu

Go back to Potassium Binding Sites List in 6tmu
Potassium binding site 3 out of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K602

b:0.4
occ:1.00
O1A E:ATP603 2.6 0.3 1.0
O1G E:ATP603 2.8 0.7 1.0
O E:THR30 3.2 1.0 1.0
O E:LYS50 3.4 1.0 1.0
PA E:ATP603 3.4 0.1 1.0
O3A E:ATP603 3.5 1.0 1.0
O3G E:ATP603 3.7 1.0 1.0
PG E:ATP603 3.8 0.8 1.0
O2A E:ATP603 4.0 0.7 1.0
OG1 E:THR30 4.1 0.6 1.0
C E:THR30 4.2 0.7 1.0
N E:GLY52 4.2 0.6 1.0
OG1 E:THR89 4.4 0.4 1.0
N E:GLY32 4.5 1.0 1.0
CA E:MET31 4.5 0.5 1.0
O E:GLY32 4.5 0.2 1.0
C E:LYS50 4.5 0.1 1.0
NZ E:LYS50 4.6 0.3 1.0
CA E:ASP51 4.7 0.4 1.0
CB E:THR30 4.8 0.1 1.0
O3B E:ATP603 4.8 0.2 1.0
N E:MET31 4.9 0.9 1.0
PB E:ATP603 4.9 0.1 1.0
O5' E:ATP603 4.9 0.3 1.0
C E:MET31 4.9 0.0 1.0
O2G E:ATP603 4.9 0.8 1.0
CA E:GLY52 4.9 0.7 1.0
C E:ASP51 5.0 0.2 1.0

Potassium binding site 4 out of 4 in 6tmu

Go back to Potassium Binding Sites List in 6tmu
Potassium binding site 4 out of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe atom residue distance (Å) B Occ
G:K602

b:0.6
occ:1.00
O1A G:ATP603 2.6 0.6 1.0
O G:THR30 3.0 0.3 1.0
O1G G:ATP603 3.3 0.7 1.0
O G:LYS50 3.3 0.2 1.0
PA G:ATP603 3.5 0.6 1.0
O3A G:ATP603 3.8 0.2 1.0
O2A G:ATP603 3.9 0.2 1.0
O3G G:ATP603 4.1 0.5 1.0
OG1 G:THR30 4.1 0.4 1.0
C G:THR30 4.1 0.2 1.0
PG G:ATP603 4.3 0.8 1.0
N G:GLY52 4.3 0.2 1.0
NZ G:LYS50 4.3 0.5 1.0
O G:GLY32 4.3 0.7 1.0
C G:LYS50 4.4 0.1 1.0
N G:GLY32 4.5 0.5 1.0
CA G:MET31 4.5 0.8 1.0
OG1 G:THR89 4.6 89.2 1.0
CA G:ASP51 4.7 0.6 1.0
CB G:THR30 4.7 0.8 1.0
CG G:LYS50 4.8 0.9 1.0
N G:MET31 4.8 0.5 1.0
C G:MET31 4.9 0.8 1.0
O5' G:ATP603 5.0 0.4 1.0
C G:ASP51 5.0 0.9 1.0
N G:ASP51 5.0 0.9 1.0

Reference:

A.Bracher, S.S.Paul, H.Wang, N.Wischnewski, F.U.Hartl, M.Hayer-Hartl. Structure and Conformational Cycle of A Bacteriophage-Encoded Chaperonin Plos One 2020.
ISSN: ESSN 1932-6203
Page generated: Mon Aug 12 17:40:30 2024

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