Potassium in PDB 6tmu: Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
Protein crystallography data
The structure of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II, PDB code: 6tmu
was solved by
A.Bracher,
S.S.Paul,
H.Wang,
N.Wischnewski,
F.U.Hartl,
M.Hayer-Hartl,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
3.54
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
145.516,
151.461,
261.347,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
25 /
27.5
|
Other elements in 6tmu:
The structure of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
(pdb code 6tmu). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the
Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II, PDB code: 6tmu:
Jump to Potassium binding site number:
1;
2;
3;
4;
Potassium binding site 1 out
of 4 in 6tmu
Go back to
Potassium Binding Sites List in 6tmu
Potassium binding site 1 out
of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K602
b:0.2
occ:1.00
|
O1A
|
A:ATP603
|
2.5
|
0.4
|
1.0
|
O1G
|
A:ATP603
|
2.8
|
0.1
|
1.0
|
O
|
A:THR30
|
3.1
|
0.9
|
1.0
|
O
|
A:LYS50
|
3.3
|
0.5
|
1.0
|
PA
|
A:ATP603
|
3.3
|
0.8
|
1.0
|
O3A
|
A:ATP603
|
3.5
|
0.8
|
1.0
|
O2A
|
A:ATP603
|
3.7
|
0.8
|
1.0
|
O3G
|
A:ATP603
|
3.7
|
0.4
|
1.0
|
PG
|
A:ATP603
|
3.8
|
0.4
|
1.0
|
OG1
|
A:THR30
|
3.9
|
0.1
|
1.0
|
N
|
A:GLY52
|
4.1
|
0.9
|
1.0
|
C
|
A:THR30
|
4.1
|
0.6
|
1.0
|
OG1
|
A:THR89
|
4.3
|
0.2
|
1.0
|
C
|
A:LYS50
|
4.4
|
0.5
|
1.0
|
CA
|
A:MET31
|
4.5
|
0.1
|
1.0
|
NZ
|
A:LYS50
|
4.6
|
1.0
|
1.0
|
N
|
A:GLY32
|
4.6
|
0.8
|
1.0
|
CB
|
A:THR30
|
4.6
|
0.1
|
1.0
|
O
|
A:GLY32
|
4.6
|
0.2
|
1.0
|
CA
|
A:ASP51
|
4.6
|
0.7
|
1.0
|
O3B
|
A:ATP603
|
4.8
|
0.1
|
1.0
|
O5'
|
A:ATP603
|
4.8
|
0.0
|
1.0
|
CA
|
A:GLY52
|
4.8
|
0.8
|
1.0
|
N
|
A:MET31
|
4.8
|
0.4
|
1.0
|
PB
|
A:ATP603
|
4.8
|
0.4
|
1.0
|
C
|
A:ASP51
|
4.9
|
0.6
|
1.0
|
O2G
|
A:ATP603
|
4.9
|
0.7
|
1.0
|
C
|
A:MET31
|
5.0
|
0.1
|
1.0
|
CG
|
A:LYS50
|
5.0
|
0.9
|
1.0
|
|
Potassium binding site 2 out
of 4 in 6tmu
Go back to
Potassium Binding Sites List in 6tmu
Potassium binding site 2 out
of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K602
b:0.5
occ:1.00
|
O1A
|
C:ATP603
|
2.7
|
0.5
|
1.0
|
O1G
|
C:ATP603
|
3.0
|
0.3
|
1.0
|
O
|
C:THR30
|
3.1
|
0.3
|
1.0
|
O
|
C:LYS50
|
3.3
|
0.8
|
1.0
|
PA
|
C:ATP603
|
3.5
|
0.2
|
1.0
|
O3A
|
C:ATP603
|
3.6
|
0.9
|
1.0
|
O3G
|
C:ATP603
|
3.7
|
0.4
|
1.0
|
O2A
|
C:ATP603
|
3.8
|
0.3
|
1.0
|
PG
|
C:ATP603
|
3.9
|
0.8
|
1.0
|
OG1
|
C:THR30
|
4.0
|
0.3
|
1.0
|
C
|
C:THR30
|
4.1
|
0.9
|
1.0
|
N
|
C:GLY52
|
4.1
|
0.1
|
1.0
|
C
|
C:LYS50
|
4.4
|
0.4
|
1.0
|
OG1
|
C:THR89
|
4.4
|
0.3
|
1.0
|
NZ
|
C:LYS50
|
4.5
|
0.0
|
1.0
|
O
|
C:GLY32
|
4.5
|
0.7
|
1.0
|
CA
|
C:MET31
|
4.5
|
0.8
|
1.0
|
N
|
C:GLY32
|
4.5
|
0.2
|
1.0
|
CB
|
C:THR30
|
4.6
|
0.6
|
1.0
|
CA
|
C:ASP51
|
4.7
|
0.2
|
1.0
|
N
|
C:MET31
|
4.8
|
0.1
|
1.0
|
O3B
|
C:ATP603
|
4.9
|
0.2
|
1.0
|
CA
|
C:GLY52
|
4.9
|
0.5
|
1.0
|
C
|
C:MET31
|
4.9
|
0.6
|
1.0
|
C
|
C:ASP51
|
4.9
|
0.2
|
1.0
|
CG
|
C:LYS50
|
4.9
|
0.6
|
1.0
|
PB
|
C:ATP603
|
4.9
|
0.4
|
1.0
|
|
Potassium binding site 3 out
of 4 in 6tmu
Go back to
Potassium Binding Sites List in 6tmu
Potassium binding site 3 out
of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K602
b:0.4
occ:1.00
|
O1A
|
E:ATP603
|
2.6
|
0.3
|
1.0
|
O1G
|
E:ATP603
|
2.8
|
0.7
|
1.0
|
O
|
E:THR30
|
3.2
|
1.0
|
1.0
|
O
|
E:LYS50
|
3.4
|
1.0
|
1.0
|
PA
|
E:ATP603
|
3.4
|
0.1
|
1.0
|
O3A
|
E:ATP603
|
3.5
|
1.0
|
1.0
|
O3G
|
E:ATP603
|
3.7
|
1.0
|
1.0
|
PG
|
E:ATP603
|
3.8
|
0.8
|
1.0
|
O2A
|
E:ATP603
|
4.0
|
0.7
|
1.0
|
OG1
|
E:THR30
|
4.1
|
0.6
|
1.0
|
C
|
E:THR30
|
4.2
|
0.7
|
1.0
|
N
|
E:GLY52
|
4.2
|
0.6
|
1.0
|
OG1
|
E:THR89
|
4.4
|
0.4
|
1.0
|
N
|
E:GLY32
|
4.5
|
1.0
|
1.0
|
CA
|
E:MET31
|
4.5
|
0.5
|
1.0
|
O
|
E:GLY32
|
4.5
|
0.2
|
1.0
|
C
|
E:LYS50
|
4.5
|
0.1
|
1.0
|
NZ
|
E:LYS50
|
4.6
|
0.3
|
1.0
|
CA
|
E:ASP51
|
4.7
|
0.4
|
1.0
|
CB
|
E:THR30
|
4.8
|
0.1
|
1.0
|
O3B
|
E:ATP603
|
4.8
|
0.2
|
1.0
|
N
|
E:MET31
|
4.9
|
0.9
|
1.0
|
PB
|
E:ATP603
|
4.9
|
0.1
|
1.0
|
O5'
|
E:ATP603
|
4.9
|
0.3
|
1.0
|
C
|
E:MET31
|
4.9
|
0.0
|
1.0
|
O2G
|
E:ATP603
|
4.9
|
0.8
|
1.0
|
CA
|
E:GLY52
|
4.9
|
0.7
|
1.0
|
C
|
E:ASP51
|
5.0
|
0.2
|
1.0
|
|
Potassium binding site 4 out
of 4 in 6tmu
Go back to
Potassium Binding Sites List in 6tmu
Potassium binding site 4 out
of 4 in the Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II
 Mono view
 Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of the Chaperonin GP146 From the Bacteriophage El 2 (Pseudomonas Aeruginosa) in Presence of Atp-Befx, Crystal Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K602
b:0.6
occ:1.00
|
O1A
|
G:ATP603
|
2.6
|
0.6
|
1.0
|
O
|
G:THR30
|
3.0
|
0.3
|
1.0
|
O1G
|
G:ATP603
|
3.3
|
0.7
|
1.0
|
O
|
G:LYS50
|
3.3
|
0.2
|
1.0
|
PA
|
G:ATP603
|
3.5
|
0.6
|
1.0
|
O3A
|
G:ATP603
|
3.8
|
0.2
|
1.0
|
O2A
|
G:ATP603
|
3.9
|
0.2
|
1.0
|
O3G
|
G:ATP603
|
4.1
|
0.5
|
1.0
|
OG1
|
G:THR30
|
4.1
|
0.4
|
1.0
|
C
|
G:THR30
|
4.1
|
0.2
|
1.0
|
PG
|
G:ATP603
|
4.3
|
0.8
|
1.0
|
N
|
G:GLY52
|
4.3
|
0.2
|
1.0
|
NZ
|
G:LYS50
|
4.3
|
0.5
|
1.0
|
O
|
G:GLY32
|
4.3
|
0.7
|
1.0
|
C
|
G:LYS50
|
4.4
|
0.1
|
1.0
|
N
|
G:GLY32
|
4.5
|
0.5
|
1.0
|
CA
|
G:MET31
|
4.5
|
0.8
|
1.0
|
OG1
|
G:THR89
|
4.6
|
89.2
|
1.0
|
CA
|
G:ASP51
|
4.7
|
0.6
|
1.0
|
CB
|
G:THR30
|
4.7
|
0.8
|
1.0
|
CG
|
G:LYS50
|
4.8
|
0.9
|
1.0
|
N
|
G:MET31
|
4.8
|
0.5
|
1.0
|
C
|
G:MET31
|
4.9
|
0.8
|
1.0
|
O5'
|
G:ATP603
|
5.0
|
0.4
|
1.0
|
C
|
G:ASP51
|
5.0
|
0.9
|
1.0
|
N
|
G:ASP51
|
5.0
|
0.9
|
1.0
|
|
Reference:
A.Bracher,
S.S.Paul,
H.Wang,
N.Wischnewski,
F.U.Hartl,
M.Hayer-Hartl.
Structure and Conformational Cycle of A Bacteriophage-Encoded Chaperonin Plos One 2020.
ISSN: ESSN 1932-6203
Page generated: Mon Aug 12 17:40:30 2024
|