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Potassium in PDB 6t40: Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide

Protein crystallography data

The structure of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide, PDB code: 6t40 was solved by H.M.E.Duyvesteyn, J.Ren, T.S.Walter, E.E.Fry, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.92 / 1.67
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 342.700, 348.300, 351.600, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 19.1

Other elements in 6t40:

The structure of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide (pdb code 6t40). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide, PDB code: 6t40:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 6t40

Go back to Potassium Binding Sites List in 6t40
Potassium binding site 1 out of 4 in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K303

b:25.8
occ:1.00
 O A:VAL15 2.8 17.6 1.0
O A:ASN57 2.9 19.7 1.0
OD1 A:ASN17 2.9 21.0 1.0
OG1 A:THR14 3.0 23.8 1.0
O A:HOH644 3.5 75.3 1.0
CG A:ASN17 3.5 22.4 1.0
O A:HOH640 3.7 48.7 1.0
O A:HOH576 3.8 34.8 1.0
CB A:THR14 3.8 21.1 1.0
O A:HOH523 3.9 28.3 1.0
ND2 A:ASN17 3.9 23.1 1.0
C A:ASN57 4.0 21.6 1.0
C A:VAL15 4.1 20.6 1.0
N A:ASN17 4.1 14.9 1.0
C A:GLU16 4.4 17.3 1.0
CB A:ASN17 4.6 15.2 1.0
C A:THR14 4.6 18.1 1.0
CA A:ASN17 4.6 15.0 1.0
N A:ASN57 4.6 16.8 1.0
CA A:GLU16 4.6 16.7 1.0
O A:HOH586 4.6 41.6 1.0
CA A:ASN57 4.7 16.8 1.0
N A:VAL15 4.7 15.4 1.0
O A:HOH421 4.7 39.1 1.0
CB A:ASN57 4.7 16.9 1.0
CG2 A:THR14 4.8 21.9 1.0
O A:THR14 4.8 17.3 1.0
N A:GLU16 4.8 16.4 1.0
CA A:THR14 4.9 15.2 1.0
N A:THR58 5.0 16.9 1.0

Potassium binding site 2 out of 4 in 6t40

Go back to Potassium Binding Sites List in 6t40
Potassium binding site 2 out of 4 in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K304

b:30.3
occ:1.00
 O A:LEU33 2.8 16.8 1.0
O D:ALA65 2.9 29.8 1.0
O D:GLU63 2.9 23.6 1.0
O D:HOH128 3.2 32.2 1.0
O A:THR30 3.2 18.2 1.0
O A:PRO31 3.3 18.8 1.0
NE2 A:GLN34 3.4 18.7 1.0
C A:PRO31 3.8 16.8 1.0
CA A:PRO31 3.8 17.1 1.0
C D:GLU63 3.8 23.5 1.0
C A:LEU33 4.0 18.6 1.0
C A:THR30 4.1 17.9 1.0
C D:ALA65 4.1 29.2 1.0
O D:LYS62 4.2 20.1 1.0
OD1 A:ASN43 4.2 21.5 1.0
CD A:GLN34 4.3 18.8 1.0
N A:PRO31 4.3 17.2 1.0
CA D:GLU63 4.4 22.9 1.0
CD D:PRO67 4.4 23.4 1.0
O D:HOH107 4.4 36.4 1.0
N A:LEU33 4.4 15.2 1.0
CG D:PRO67 4.5 27.8 1.0
N D:ALA65 4.6 28.7 1.0
CA A:LEU33 4.7 16.8 1.0
N A:ALA32 4.8 13.7 1.0
OE1 A:GLN34 4.8 18.6 1.0
CA D:VAL66 4.8 24.0 1.0
N D:ALA64 4.9 18.4 1.0
CB A:LEU33 4.9 16.0 1.0
OG1 A:THR30 4.9 25.3 1.0
C D:ALA64 4.9 26.5 1.0
N D:PRO67 4.9 22.6 1.0
N D:VAL66 5.0 23.2 1.0

Potassium binding site 3 out of 4 in 6t40

Go back to Potassium Binding Sites List in 6t40
Potassium binding site 3 out of 4 in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K301

b:71.0
occ:1.00
 O B:HOH491 3.2 20.1 1.0
O B:HOH518 3.2 54.6 1.0
O B:GLN53 3.6 18.7 1.0
C B:GLN53 4.6 18.4 1.0
CB B:GLN53 4.7 17.6 1.0
O B:HOH544 4.7 16.8 1.0
N B:GLN53 4.9 13.7 1.0

Potassium binding site 4 out of 4 in 6t40

Go back to Potassium Binding Sites List in 6t40
Potassium binding site 4 out of 4 in the Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K302

b:31.3
occ:1.00
 O A:SER42 2.9 15.4 1.0
OE1 C:GLN222 2.9 17.6 1.0
O C:HOH409 3.0 19.2 1.0
O A:HOH462 3.1 21.0 1.0
O A:HOH630 3.3 36.1 1.0
OD2 C:ASP114 3.3 20.5 1.0
CB C:ASP114 3.7 16.8 1.0
CG C:ASP114 3.7 25.7 1.0
CG2 A:THR41 3.8 15.9 1.0
C A:SER42 3.9 17.3 1.0
CD C:GLN222 4.1 24.3 1.0
O C:HOH467 4.2 22.8 1.0
O A:HOH521 4.3 38.6 1.0
CB A:SER42 4.5 16.1 1.0
O C:ALA221 4.5 14.3 1.0
CA A:SER42 4.5 14.8 1.0
N A:SER42 4.6 14.2 1.0
O A:ALA44 4.6 18.9 1.0
OD1 C:ASP114 4.7 20.7 1.0
NE2 C:GLN222 4.7 17.8 1.0
OG A:SER42 4.8 16.3 1.0
N A:ASN43 4.8 15.2 1.0
OE2 C:GLU50 4.9 20.5 1.0
O A:HOH617 4.9 35.6 1.0
CA A:ASN43 4.9 16.7 1.0
O C:GLN48 5.0 13.5 1.0

Reference:

H.M.E.Duyvesteyn, J.Ren, T.S.Walter, E.E.Fry, D.I.Stuart. Bovine Enterovirus F3 in Complex with A Cysteinylglycine Dipeptide To Be Published.
Page generated: Mon Aug 12 17:37:26 2024

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