Potassium in PDB 6r41: Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl

The structure of Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl, PDB code: 6r41 was solved by D.Aparicio, I.Fita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	115.00 / 2.21
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	110.026, 151.569, 176.548, 90.00, 90.00, 90.00
R / Rfree (%)	19 / 21.6

The binding sites of Potassium atom in the Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl (pdb code 6r41). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl, PDB code: 6r41:

Potassium binding site 1 out of 1 in the Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of P110 From Mycoplasma Genitalium Complexed with 3'Sl within 5.0Å range: probe atom residue distance (Å) B Occ A:K1001 b:41.1 occ:1.00 O A:ARG834 2.7 38.1 1.0 O A:GLY839 2.8 38.2 1.0 O A:THR831 2.8 42.7 1.0 O A:HOH1225 2.8 43.5 1.0 O A:HOH1235 2.9 40.2 1.0 OD1 A:ASP836 3.0 42.3 1.0 OD2 A:ASP836 3.2 43.1 1.0 CG A:ASP836 3.3 43.3 1.0 C A:GLY839 3.8 42.5 1.0 C A:THR831 3.9 44.7 1.0 C A:ARG834 3.9 45.2 1.0 CA A:LYS840 3.9 40.8 1.0 CZ A:TYR830 4.0 39.9 1.0 N A:THR831 4.1 44.4 1.0 N A:ASP836 4.1 39.3 1.0 CE2 A:TYR830 4.2 39.6 1.0 CE1 A:TYR830 4.3 40.6 1.0 N A:LYS840 4.3 40.4 1.0 OH A:TYR830 4.4 38.6 1.0 CB A:ASP836 4.5 41.0 1.0 CD2 A:TYR830 4.5 37.4 1.0 CD1 A:TYR830 4.6 38.0 1.0 CB A:LYS840 4.6 45.2 1.0 CA A:THR831 4.6 42.5 1.0 N A:ARG834 4.6 48.2 1.0 CG A:TYR830 4.6 38.5 1.0 C A:TRP838 4.7 36.5 1.0 CB A:TRP838 4.7 37.9 1.0 CA A:ARG834 4.7 49.5 1.0 O A:TRP838 4.8 34.2 1.0 N A:GLU832 4.8 43.5 1.0 O A:GLU832 4.8 45.6 1.0 C A:GLU832 4.8 47.7 1.0 N A:VAL835 4.8 42.0 1.0 N A:VAL841 4.8 38.9 1.0 CA A:VAL835 4.8 42.4 1.0 N A:GLY839 4.9 37.1 1.0 CA A:ASP836 4.9 40.9 1.0 CA A:GLU832 4.9 46.0 1.0 CG A:LYS840 4.9 45.2 1.0 C A:LYS840 4.9 39.9 1.0 C A:VAL835 5.0 42.3 1.0

D.Aparicio, S.Torres-Puig, M.Ratera, E.Querol, J.Pinyol, O.Q.Pich, I.Fita. Mycoplasma Genitalium Adhesin P110 Binds Sialic-Acid Human Receptors. Nat Commun V. 9 4471 2018.
ISSN: ESSN 2041-1723
PubMed: 30367053
DOI: 10.1038/S41467-018-06963-Y