Atomistry » Potassium » PDB 6qml-6rv4 » 6r3t
Atomistry »
  Potassium »
    PDB 6qml-6rv4 »
      6r3t »

Potassium in PDB 6r3t: Structure of P110 From Mycoplasma Genitalium at 2.7A

Protein crystallography data

The structure of Structure of P110 From Mycoplasma Genitalium at 2.7A, PDB code: 6r3t was solved by D.Aparicio, I.Fita, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.86 / 2.73
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 109.600, 152.940, 172.710, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of P110 From Mycoplasma Genitalium at 2.7A (pdb code 6r3t). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of P110 From Mycoplasma Genitalium at 2.7A, PDB code: 6r3t:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6r3t

Go back to Potassium Binding Sites List in 6r3t
Potassium binding site 1 out of 2 in the Structure of P110 From Mycoplasma Genitalium at 2.7A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of P110 From Mycoplasma Genitalium at 2.7A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1002

b:0.1
occ:1.00
OD1 A:ASP346 2.3 0.7 1.0
O A:GLY348 2.5 1.0 1.0
O A:HOH1149 2.7 61.5 1.0
OD2 A:ASP346 2.9 0.2 1.0
CG A:ASP346 3.0 1.0 1.0
C A:GLY348 3.8 0.9 1.0
OD1 A:ASP350 4.3 0.8 1.0
CB A:ASP346 4.5 96.8 1.0
N A:GLU349 4.7 0.9 1.0
CA A:GLY348 4.7 0.6 1.0
CA A:GLU349 4.7 0.7 1.0

Potassium binding site 2 out of 2 in 6r3t

Go back to Potassium Binding Sites List in 6r3t
Potassium binding site 2 out of 2 in the Structure of P110 From Mycoplasma Genitalium at 2.7A


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of P110 From Mycoplasma Genitalium at 2.7A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1003

b:1.0
occ:1.00
O A:HOH1139 2.9 87.2 1.0
OE2 A:GLU785 2.9 0.8 1.0
O A:ASN804 3.1 73.0 1.0
OE1 A:GLU785 3.2 1.0 1.0
CD A:GLU785 3.4 0.0 1.0
C A:ASN804 4.3 71.9 1.0
N A:ASN806 4.4 90.7 1.0
CA A:ASN805 4.9 83.6 1.0
CG A:GLU785 4.9 90.0 1.0

Reference:

D.Aparicio, S.Torres-Puig, M.Ratera, E.Querol, J.Pinol, O.Q.Pich, I.Fita. Mycoplasma Genitalium Adhesin P110 Binds Sialic-Acid Human Receptors. Nat Commun V. 9 4471 2018.
ISSN: ESSN 2041-1723
PubMed: 30367053
DOI: 10.1038/S41467-018-06963-Y
Page generated: Mon Aug 12 17:27:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy