Atomistry » Potassium » PDB 6qml-6rv4 » 6r16
Atomistry »
  Potassium »
    PDB 6qml-6rv4 »
      6r16 »

Potassium in PDB 6r16: Crystal Structure of the SUN1-KASH4 6:6 Complex

Protein crystallography data

The structure of Crystal Structure of the SUN1-KASH4 6:6 Complex, PDB code: 6r16 was solved by M.Gurusaran, O.R.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.83 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 104.370, 117.210, 138.420, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 25.5

Other elements in 6r16:

The structure of Crystal Structure of the SUN1-KASH4 6:6 Complex also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the SUN1-KASH4 6:6 Complex (pdb code 6r16). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Crystal Structure of the SUN1-KASH4 6:6 Complex, PDB code: 6r16:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 1 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K901

b:61.6
occ:1.00
 O A:TYR802 2.7 58.9 1.0
O A:VAL684 2.7 48.9 1.0
O A:ASP689 2.8 60.5 1.0
O A:GLN687 2.8 47.2 1.0
CG2 A:VAL684 3.1 50.2 1.0
O A:ASN694 3.2 48.1 1.0
C A:VAL684 3.7 47.1 1.0
C A:TYR802 3.7 54.5 1.0
C A:ASP689 3.7 58.1 1.0
C A:GLN687 3.8 47.0 1.0
CG2 A:ILE690 4.2 59.9 1.0
N A:ASP689 4.2 55.6 1.0
C A:ASN694 4.3 57.1 1.0
CB A:VAL684 4.3 47.0 1.0
CA A:TYR802 4.4 53.1 1.0
CA A:VAL684 4.5 51.0 1.0
C A:PRO688 4.5 59.0 1.0
CB A:GLN687 4.5 50.3 1.0
N A:ILE690 4.5 55.1 1.0
CA A:ILE690 4.5 51.8 1.0
CA A:GLN687 4.5 47.8 1.0
CB A:ARG803 4.5 52.9 1.0
CA A:ASP689 4.6 59.4 1.0
CB A:ASN694 4.6 56.1 1.0
N A:VAL685 4.6 48.3 1.0
N A:GLN687 4.6 48.6 1.0
N A:ARG803 4.6 53.8 1.0
CA A:VAL685 4.7 56.5 1.0
N A:PRO688 4.7 49.8 1.0
CA A:ARG803 4.7 56.0 1.0
O A:PRO688 4.8 58.1 1.0
CB A:TYR802 4.9 57.4 1.0
CA A:PRO688 5.0 47.5 1.0
C A:VAL685 5.0 58.8 1.0
CB A:ILE690 5.0 52.4 1.0

Potassium binding site 2 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 2 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K902

b:55.3
occ:1.00
 O B:VAL684 2.6 56.5 1.0
O B:TYR802 2.7 51.5 1.0
O B:ASP689 2.7 54.2 1.0
O B:GLN687 2.8 46.8 1.0
O B:ASN694 3.2 46.0 1.0
C B:VAL684 3.6 53.6 1.0
C B:TYR802 3.7 52.8 1.0
C B:ASP689 3.8 52.1 1.0
C B:GLN687 3.9 49.9 1.0
CG2 B:ILE690 4.1 52.4 1.0
CB B:VAL684 4.2 52.4 1.0
C B:ASN694 4.2 49.7 1.0
CA B:VAL684 4.3 51.3 1.0
N B:ASP689 4.3 55.6 1.0
CB B:GLN687 4.5 51.3 1.0
CA B:TYR802 4.5 46.1 1.0
CA B:ILE690 4.5 41.6 1.0
CB B:ASN694 4.5 52.4 1.0
CA B:GLN687 4.5 51.1 1.0
N B:VAL685 4.5 51.6 1.0
C B:PRO688 4.5 55.9 1.0
N B:ILE690 4.5 51.3 1.0
N B:GLN687 4.6 55.8 1.0
CB B:ARG803 4.6 49.7 1.0
CA B:ASP689 4.6 56.6 1.0
CG2 B:VAL684 4.6 52.3 1.0
N B:ARG803 4.7 54.7 1.0
CA B:VAL685 4.7 52.3 1.0
CA B:ARG803 4.8 52.1 1.0
N B:PRO688 4.8 53.2 1.0
O B:PRO688 4.9 60.2 1.0
CB B:ILE690 5.0 42.0 1.0
C B:VAL685 5.0 52.4 1.0

Potassium binding site 3 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 3 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K901

b:51.1
occ:1.00
 O C:VAL684 2.5 46.4 1.0
O C:TYR802 2.7 39.7 1.0
O C:ASP689 2.7 59.8 1.0
O C:GLN687 2.8 53.9 1.0
O C:ASN694 3.1 41.4 1.0
C C:VAL684 3.6 47.3 1.0
C C:TYR802 3.8 40.1 1.0
C C:ASP689 3.8 50.8 1.0
C C:GLN687 3.8 50.4 1.0
C C:ASN694 4.1 45.6 1.0
CB C:VAL684 4.1 53.3 1.0
CA C:VAL684 4.3 51.2 1.0
N C:ASP689 4.3 49.0 1.0
CG2 C:ILE690 4.4 37.6 1.0
CB C:GLN687 4.4 50.7 1.0
N C:VAL685 4.5 43.9 1.0
CA C:GLN687 4.5 47.1 1.0
CA C:TYR802 4.5 34.6 1.0
CB C:ASN694 4.5 48.1 1.0
C C:PRO688 4.5 46.5 1.0
N C:GLN687 4.5 41.2 1.0
CA C:ASP689 4.6 57.2 1.0
CB C:ARG803 4.6 39.8 1.0
N C:ILE690 4.6 44.9 1.0
CA C:VAL685 4.6 39.9 1.0
CA C:ILE690 4.6 40.8 1.0
CG2 C:VAL684 4.7 52.5 1.0
N C:ARG803 4.7 43.7 1.0
N C:PRO688 4.8 45.9 1.0
CA C:ARG803 4.8 47.2 1.0
O C:PRO688 4.9 48.2 1.0
C C:VAL685 4.9 44.4 1.0
CA C:ASN694 4.9 48.8 1.0

Potassium binding site 4 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 4 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K902

b:50.9
occ:1.00
 O D:VAL684 2.6 57.9 1.0
O D:TYR802 2.7 51.8 1.0
O D:ASP689 2.7 54.4 1.0
O D:GLN687 2.9 53.7 1.0
O D:ASN694 3.1 46.3 1.0
CG2 D:VAL684 3.4 55.9 1.0
C D:VAL684 3.6 53.4 1.0
C D:TYR802 3.7 48.8 1.0
C D:ASP689 3.8 55.2 1.0
C D:GLN687 3.9 46.9 1.0
C D:ASN694 4.1 44.9 1.0
CG2 D:ILE690 4.3 52.5 1.0
CB D:VAL684 4.3 51.3 1.0
CA D:VAL684 4.4 50.6 1.0
N D:ASP689 4.4 55.1 1.0
CA D:TYR802 4.4 48.9 1.0
CB D:ASN694 4.4 45.3 1.0
CB D:GLN687 4.5 54.5 1.0
CA D:GLN687 4.5 47.8 1.0
N D:GLN687 4.6 47.2 1.0
C D:PRO688 4.6 57.1 1.0
N D:VAL685 4.6 49.1 1.0
CA D:ILE690 4.6 54.3 1.0
N D:ILE690 4.6 59.2 1.0
CA D:ASP689 4.6 58.7 1.0
CG1 D:VAL684 4.6 49.6 1.0
N D:ARG803 4.7 43.0 1.0
CA D:VAL685 4.7 49.9 1.0
CB D:ARG803 4.7 49.7 1.0
N D:PRO688 4.8 47.2 1.0
O D:PRO688 4.8 64.3 1.0
CA D:ASN694 4.9 48.2 1.0
CA D:ARG803 4.9 44.9 1.0
CB D:TYR802 4.9 49.9 1.0
C D:VAL685 5.0 50.2 1.0
N D:CYS695 5.0 45.3 1.0

Potassium binding site 5 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 5 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K902

b:66.5
occ:1.00
 O E:VAL684 2.6 67.3 1.0
O E:TYR802 2.7 77.9 1.0
O E:ASP689 2.8 75.9 1.0
O E:GLN687 2.8 66.9 1.0
O E:ASN694 3.2 61.7 1.0
CG1 E:VAL684 3.3 80.5 1.0
C E:VAL684 3.7 69.8 1.0
C E:TYR802 3.7 71.7 1.0
C E:ASP689 3.7 69.4 1.0
C E:GLN687 3.8 67.4 1.0
CG2 E:ILE690 4.1 63.7 1.0
C E:ASN694 4.2 63.6 1.0
CB E:VAL684 4.3 79.7 1.0
N E:ASP689 4.3 63.9 1.0
CA E:VAL684 4.3 72.9 1.0
CB E:GLN687 4.4 62.0 1.0
CA E:TYR802 4.4 67.4 1.0
CA E:GLN687 4.5 63.5 1.0
CA E:ILE690 4.5 59.9 1.0
C E:PRO688 4.5 67.9 1.0
N E:ILE690 4.5 63.2 1.0
N E:GLN687 4.6 66.3 1.0
CB E:ASN694 4.6 69.6 1.0
N E:VAL685 4.6 70.5 1.0
CA E:ASP689 4.6 69.9 1.0
CB E:ARG803 4.6 74.0 1.0
N E:ARG803 4.7 72.7 1.0
N E:PRO688 4.8 67.6 1.0
CA E:VAL685 4.8 69.8 1.0
CA E:ARG803 4.8 74.0 1.0
O E:PRO688 4.8 71.0 1.0
CB E:TYR802 4.9 70.7 1.0
CB E:ILE690 4.9 59.1 1.0

Potassium binding site 6 out of 6 in 6r16

Go back to Potassium Binding Sites List in 6r16
Potassium binding site 6 out of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K901

b:66.7
occ:1.00
 O F:VAL684 2.6 67.0 1.0
O F:TYR802 2.7 72.7 1.0
O F:ASP689 2.8 76.8 1.0
O F:GLN687 2.8 59.5 1.0
CG2 F:VAL684 3.1 70.3 1.0
O F:ASN694 3.2 61.7 1.0
C F:VAL684 3.6 71.4 1.0
C F:ASP689 3.7 68.0 1.0
C F:TYR802 3.7 70.8 1.0
C F:GLN687 3.8 60.3 1.0
CG2 F:ILE690 4.2 61.1 1.0
N F:ASP689 4.3 64.8 1.0
CB F:VAL684 4.3 67.3 1.0
C F:ASN694 4.3 64.6 1.0
CA F:VAL684 4.4 57.7 1.0
CB F:GLN687 4.4 65.6 1.0
N F:VAL685 4.5 69.7 1.0
CA F:GLN687 4.5 60.7 1.0
C F:PRO688 4.5 68.4 1.0
CB F:ARG803 4.5 75.0 1.0
N F:GLN687 4.5 69.1 1.0
CA F:TYR802 4.5 69.5 1.0
N F:ILE690 4.5 67.2 1.0
CA F:ILE690 4.5 65.0 1.0
CB F:ASN694 4.5 71.6 1.0
CA F:ASP689 4.6 67.1 1.0
CA F:VAL685 4.6 70.8 1.0
N F:ARG803 4.6 73.9 1.0
CA F:ARG803 4.7 73.3 1.0
N F:PRO688 4.7 61.0 1.0
O F:PRO688 4.8 70.8 1.0
C F:VAL685 4.8 74.0 1.0
CA F:PRO688 5.0 61.1 1.0

Reference:

M.Gurusaran, O.R.Davies. Linc Complex Clustering Through Head-to-Head Assembly Provides A Novel Mechanism For Nuclear and Chromosomal Anchoring. To Be Published.
Page generated: Mon Aug 12 17:23:43 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy