Potassium in PDB 6r16: Crystal Structure of the SUN1-KASH4 6:6 Complex
Protein crystallography data
The structure of Crystal Structure of the SUN1-KASH4 6:6 Complex, PDB code: 6r16
was solved by
M.Gurusaran,
O.R.Davies,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.83 /
2.75
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
104.370,
117.210,
138.420,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.9 /
25.5
|
Other elements in 6r16:
The structure of Crystal Structure of the SUN1-KASH4 6:6 Complex also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of the SUN1-KASH4 6:6 Complex
(pdb code 6r16). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the
Crystal Structure of the SUN1-KASH4 6:6 Complex, PDB code: 6r16:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
Potassium binding site 1 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 1 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K901
b:61.6
occ:1.00
|
O
|
A:TYR802
|
2.7
|
58.9
|
1.0
|
O
|
A:VAL684
|
2.7
|
48.9
|
1.0
|
O
|
A:ASP689
|
2.8
|
60.5
|
1.0
|
O
|
A:GLN687
|
2.8
|
47.2
|
1.0
|
CG2
|
A:VAL684
|
3.1
|
50.2
|
1.0
|
O
|
A:ASN694
|
3.2
|
48.1
|
1.0
|
C
|
A:VAL684
|
3.7
|
47.1
|
1.0
|
C
|
A:TYR802
|
3.7
|
54.5
|
1.0
|
C
|
A:ASP689
|
3.7
|
58.1
|
1.0
|
C
|
A:GLN687
|
3.8
|
47.0
|
1.0
|
CG2
|
A:ILE690
|
4.2
|
59.9
|
1.0
|
N
|
A:ASP689
|
4.2
|
55.6
|
1.0
|
C
|
A:ASN694
|
4.3
|
57.1
|
1.0
|
CB
|
A:VAL684
|
4.3
|
47.0
|
1.0
|
CA
|
A:TYR802
|
4.4
|
53.1
|
1.0
|
CA
|
A:VAL684
|
4.5
|
51.0
|
1.0
|
C
|
A:PRO688
|
4.5
|
59.0
|
1.0
|
CB
|
A:GLN687
|
4.5
|
50.3
|
1.0
|
N
|
A:ILE690
|
4.5
|
55.1
|
1.0
|
CA
|
A:ILE690
|
4.5
|
51.8
|
1.0
|
CA
|
A:GLN687
|
4.5
|
47.8
|
1.0
|
CB
|
A:ARG803
|
4.5
|
52.9
|
1.0
|
CA
|
A:ASP689
|
4.6
|
59.4
|
1.0
|
CB
|
A:ASN694
|
4.6
|
56.1
|
1.0
|
N
|
A:VAL685
|
4.6
|
48.3
|
1.0
|
N
|
A:GLN687
|
4.6
|
48.6
|
1.0
|
N
|
A:ARG803
|
4.6
|
53.8
|
1.0
|
CA
|
A:VAL685
|
4.7
|
56.5
|
1.0
|
N
|
A:PRO688
|
4.7
|
49.8
|
1.0
|
CA
|
A:ARG803
|
4.7
|
56.0
|
1.0
|
O
|
A:PRO688
|
4.8
|
58.1
|
1.0
|
CB
|
A:TYR802
|
4.9
|
57.4
|
1.0
|
CA
|
A:PRO688
|
5.0
|
47.5
|
1.0
|
C
|
A:VAL685
|
5.0
|
58.8
|
1.0
|
CB
|
A:ILE690
|
5.0
|
52.4
|
1.0
|
|
Potassium binding site 2 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 2 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K902
b:55.3
occ:1.00
|
O
|
B:VAL684
|
2.6
|
56.5
|
1.0
|
O
|
B:TYR802
|
2.7
|
51.5
|
1.0
|
O
|
B:ASP689
|
2.7
|
54.2
|
1.0
|
O
|
B:GLN687
|
2.8
|
46.8
|
1.0
|
O
|
B:ASN694
|
3.2
|
46.0
|
1.0
|
C
|
B:VAL684
|
3.6
|
53.6
|
1.0
|
C
|
B:TYR802
|
3.7
|
52.8
|
1.0
|
C
|
B:ASP689
|
3.8
|
52.1
|
1.0
|
C
|
B:GLN687
|
3.9
|
49.9
|
1.0
|
CG2
|
B:ILE690
|
4.1
|
52.4
|
1.0
|
CB
|
B:VAL684
|
4.2
|
52.4
|
1.0
|
C
|
B:ASN694
|
4.2
|
49.7
|
1.0
|
CA
|
B:VAL684
|
4.3
|
51.3
|
1.0
|
N
|
B:ASP689
|
4.3
|
55.6
|
1.0
|
CB
|
B:GLN687
|
4.5
|
51.3
|
1.0
|
CA
|
B:TYR802
|
4.5
|
46.1
|
1.0
|
CA
|
B:ILE690
|
4.5
|
41.6
|
1.0
|
CB
|
B:ASN694
|
4.5
|
52.4
|
1.0
|
CA
|
B:GLN687
|
4.5
|
51.1
|
1.0
|
N
|
B:VAL685
|
4.5
|
51.6
|
1.0
|
C
|
B:PRO688
|
4.5
|
55.9
|
1.0
|
N
|
B:ILE690
|
4.5
|
51.3
|
1.0
|
N
|
B:GLN687
|
4.6
|
55.8
|
1.0
|
CB
|
B:ARG803
|
4.6
|
49.7
|
1.0
|
CA
|
B:ASP689
|
4.6
|
56.6
|
1.0
|
CG2
|
B:VAL684
|
4.6
|
52.3
|
1.0
|
N
|
B:ARG803
|
4.7
|
54.7
|
1.0
|
CA
|
B:VAL685
|
4.7
|
52.3
|
1.0
|
CA
|
B:ARG803
|
4.8
|
52.1
|
1.0
|
N
|
B:PRO688
|
4.8
|
53.2
|
1.0
|
O
|
B:PRO688
|
4.9
|
60.2
|
1.0
|
CB
|
B:ILE690
|
5.0
|
42.0
|
1.0
|
C
|
B:VAL685
|
5.0
|
52.4
|
1.0
|
|
Potassium binding site 3 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 3 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K901
b:51.1
occ:1.00
|
O
|
C:VAL684
|
2.5
|
46.4
|
1.0
|
O
|
C:TYR802
|
2.7
|
39.7
|
1.0
|
O
|
C:ASP689
|
2.7
|
59.8
|
1.0
|
O
|
C:GLN687
|
2.8
|
53.9
|
1.0
|
O
|
C:ASN694
|
3.1
|
41.4
|
1.0
|
C
|
C:VAL684
|
3.6
|
47.3
|
1.0
|
C
|
C:TYR802
|
3.8
|
40.1
|
1.0
|
C
|
C:ASP689
|
3.8
|
50.8
|
1.0
|
C
|
C:GLN687
|
3.8
|
50.4
|
1.0
|
C
|
C:ASN694
|
4.1
|
45.6
|
1.0
|
CB
|
C:VAL684
|
4.1
|
53.3
|
1.0
|
CA
|
C:VAL684
|
4.3
|
51.2
|
1.0
|
N
|
C:ASP689
|
4.3
|
49.0
|
1.0
|
CG2
|
C:ILE690
|
4.4
|
37.6
|
1.0
|
CB
|
C:GLN687
|
4.4
|
50.7
|
1.0
|
N
|
C:VAL685
|
4.5
|
43.9
|
1.0
|
CA
|
C:GLN687
|
4.5
|
47.1
|
1.0
|
CA
|
C:TYR802
|
4.5
|
34.6
|
1.0
|
CB
|
C:ASN694
|
4.5
|
48.1
|
1.0
|
C
|
C:PRO688
|
4.5
|
46.5
|
1.0
|
N
|
C:GLN687
|
4.5
|
41.2
|
1.0
|
CA
|
C:ASP689
|
4.6
|
57.2
|
1.0
|
CB
|
C:ARG803
|
4.6
|
39.8
|
1.0
|
N
|
C:ILE690
|
4.6
|
44.9
|
1.0
|
CA
|
C:VAL685
|
4.6
|
39.9
|
1.0
|
CA
|
C:ILE690
|
4.6
|
40.8
|
1.0
|
CG2
|
C:VAL684
|
4.7
|
52.5
|
1.0
|
N
|
C:ARG803
|
4.7
|
43.7
|
1.0
|
N
|
C:PRO688
|
4.8
|
45.9
|
1.0
|
CA
|
C:ARG803
|
4.8
|
47.2
|
1.0
|
O
|
C:PRO688
|
4.9
|
48.2
|
1.0
|
C
|
C:VAL685
|
4.9
|
44.4
|
1.0
|
CA
|
C:ASN694
|
4.9
|
48.8
|
1.0
|
|
Potassium binding site 4 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 4 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K902
b:50.9
occ:1.00
|
O
|
D:VAL684
|
2.6
|
57.9
|
1.0
|
O
|
D:TYR802
|
2.7
|
51.8
|
1.0
|
O
|
D:ASP689
|
2.7
|
54.4
|
1.0
|
O
|
D:GLN687
|
2.9
|
53.7
|
1.0
|
O
|
D:ASN694
|
3.1
|
46.3
|
1.0
|
CG2
|
D:VAL684
|
3.4
|
55.9
|
1.0
|
C
|
D:VAL684
|
3.6
|
53.4
|
1.0
|
C
|
D:TYR802
|
3.7
|
48.8
|
1.0
|
C
|
D:ASP689
|
3.8
|
55.2
|
1.0
|
C
|
D:GLN687
|
3.9
|
46.9
|
1.0
|
C
|
D:ASN694
|
4.1
|
44.9
|
1.0
|
CG2
|
D:ILE690
|
4.3
|
52.5
|
1.0
|
CB
|
D:VAL684
|
4.3
|
51.3
|
1.0
|
CA
|
D:VAL684
|
4.4
|
50.6
|
1.0
|
N
|
D:ASP689
|
4.4
|
55.1
|
1.0
|
CA
|
D:TYR802
|
4.4
|
48.9
|
1.0
|
CB
|
D:ASN694
|
4.4
|
45.3
|
1.0
|
CB
|
D:GLN687
|
4.5
|
54.5
|
1.0
|
CA
|
D:GLN687
|
4.5
|
47.8
|
1.0
|
N
|
D:GLN687
|
4.6
|
47.2
|
1.0
|
C
|
D:PRO688
|
4.6
|
57.1
|
1.0
|
N
|
D:VAL685
|
4.6
|
49.1
|
1.0
|
CA
|
D:ILE690
|
4.6
|
54.3
|
1.0
|
N
|
D:ILE690
|
4.6
|
59.2
|
1.0
|
CA
|
D:ASP689
|
4.6
|
58.7
|
1.0
|
CG1
|
D:VAL684
|
4.6
|
49.6
|
1.0
|
N
|
D:ARG803
|
4.7
|
43.0
|
1.0
|
CA
|
D:VAL685
|
4.7
|
49.9
|
1.0
|
CB
|
D:ARG803
|
4.7
|
49.7
|
1.0
|
N
|
D:PRO688
|
4.8
|
47.2
|
1.0
|
O
|
D:PRO688
|
4.8
|
64.3
|
1.0
|
CA
|
D:ASN694
|
4.9
|
48.2
|
1.0
|
CA
|
D:ARG803
|
4.9
|
44.9
|
1.0
|
CB
|
D:TYR802
|
4.9
|
49.9
|
1.0
|
C
|
D:VAL685
|
5.0
|
50.2
|
1.0
|
N
|
D:CYS695
|
5.0
|
45.3
|
1.0
|
|
Potassium binding site 5 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 5 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K902
b:66.5
occ:1.00
|
O
|
E:VAL684
|
2.6
|
67.3
|
1.0
|
O
|
E:TYR802
|
2.7
|
77.9
|
1.0
|
O
|
E:ASP689
|
2.8
|
75.9
|
1.0
|
O
|
E:GLN687
|
2.8
|
66.9
|
1.0
|
O
|
E:ASN694
|
3.2
|
61.7
|
1.0
|
CG1
|
E:VAL684
|
3.3
|
80.5
|
1.0
|
C
|
E:VAL684
|
3.7
|
69.8
|
1.0
|
C
|
E:TYR802
|
3.7
|
71.7
|
1.0
|
C
|
E:ASP689
|
3.7
|
69.4
|
1.0
|
C
|
E:GLN687
|
3.8
|
67.4
|
1.0
|
CG2
|
E:ILE690
|
4.1
|
63.7
|
1.0
|
C
|
E:ASN694
|
4.2
|
63.6
|
1.0
|
CB
|
E:VAL684
|
4.3
|
79.7
|
1.0
|
N
|
E:ASP689
|
4.3
|
63.9
|
1.0
|
CA
|
E:VAL684
|
4.3
|
72.9
|
1.0
|
CB
|
E:GLN687
|
4.4
|
62.0
|
1.0
|
CA
|
E:TYR802
|
4.4
|
67.4
|
1.0
|
CA
|
E:GLN687
|
4.5
|
63.5
|
1.0
|
CA
|
E:ILE690
|
4.5
|
59.9
|
1.0
|
C
|
E:PRO688
|
4.5
|
67.9
|
1.0
|
N
|
E:ILE690
|
4.5
|
63.2
|
1.0
|
N
|
E:GLN687
|
4.6
|
66.3
|
1.0
|
CB
|
E:ASN694
|
4.6
|
69.6
|
1.0
|
N
|
E:VAL685
|
4.6
|
70.5
|
1.0
|
CA
|
E:ASP689
|
4.6
|
69.9
|
1.0
|
CB
|
E:ARG803
|
4.6
|
74.0
|
1.0
|
N
|
E:ARG803
|
4.7
|
72.7
|
1.0
|
N
|
E:PRO688
|
4.8
|
67.6
|
1.0
|
CA
|
E:VAL685
|
4.8
|
69.8
|
1.0
|
CA
|
E:ARG803
|
4.8
|
74.0
|
1.0
|
O
|
E:PRO688
|
4.8
|
71.0
|
1.0
|
CB
|
E:TYR802
|
4.9
|
70.7
|
1.0
|
CB
|
E:ILE690
|
4.9
|
59.1
|
1.0
|
|
Potassium binding site 6 out
of 6 in 6r16
Go back to
Potassium Binding Sites List in 6r16
Potassium binding site 6 out
of 6 in the Crystal Structure of the SUN1-KASH4 6:6 Complex
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of the SUN1-KASH4 6:6 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:K901
b:66.7
occ:1.00
|
O
|
F:VAL684
|
2.6
|
67.0
|
1.0
|
O
|
F:TYR802
|
2.7
|
72.7
|
1.0
|
O
|
F:ASP689
|
2.8
|
76.8
|
1.0
|
O
|
F:GLN687
|
2.8
|
59.5
|
1.0
|
CG2
|
F:VAL684
|
3.1
|
70.3
|
1.0
|
O
|
F:ASN694
|
3.2
|
61.7
|
1.0
|
C
|
F:VAL684
|
3.6
|
71.4
|
1.0
|
C
|
F:ASP689
|
3.7
|
68.0
|
1.0
|
C
|
F:TYR802
|
3.7
|
70.8
|
1.0
|
C
|
F:GLN687
|
3.8
|
60.3
|
1.0
|
CG2
|
F:ILE690
|
4.2
|
61.1
|
1.0
|
N
|
F:ASP689
|
4.3
|
64.8
|
1.0
|
CB
|
F:VAL684
|
4.3
|
67.3
|
1.0
|
C
|
F:ASN694
|
4.3
|
64.6
|
1.0
|
CA
|
F:VAL684
|
4.4
|
57.7
|
1.0
|
CB
|
F:GLN687
|
4.4
|
65.6
|
1.0
|
N
|
F:VAL685
|
4.5
|
69.7
|
1.0
|
CA
|
F:GLN687
|
4.5
|
60.7
|
1.0
|
C
|
F:PRO688
|
4.5
|
68.4
|
1.0
|
CB
|
F:ARG803
|
4.5
|
75.0
|
1.0
|
N
|
F:GLN687
|
4.5
|
69.1
|
1.0
|
CA
|
F:TYR802
|
4.5
|
69.5
|
1.0
|
N
|
F:ILE690
|
4.5
|
67.2
|
1.0
|
CA
|
F:ILE690
|
4.5
|
65.0
|
1.0
|
CB
|
F:ASN694
|
4.5
|
71.6
|
1.0
|
CA
|
F:ASP689
|
4.6
|
67.1
|
1.0
|
CA
|
F:VAL685
|
4.6
|
70.8
|
1.0
|
N
|
F:ARG803
|
4.6
|
73.9
|
1.0
|
CA
|
F:ARG803
|
4.7
|
73.3
|
1.0
|
N
|
F:PRO688
|
4.7
|
61.0
|
1.0
|
O
|
F:PRO688
|
4.8
|
70.8
|
1.0
|
C
|
F:VAL685
|
4.8
|
74.0
|
1.0
|
CA
|
F:PRO688
|
5.0
|
61.1
|
1.0
|
|
Reference:
M.Gurusaran,
O.R.Davies.
Linc Complex Clustering Through Head-to-Head Assembly Provides A Novel Mechanism For Nuclear and Chromosomal Anchoring. To Be Published.
Page generated: Mon Aug 12 17:23:43 2024
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