Atomistry » Potassium » PDB 6pcd-6qm2 » 6qcz
Atomistry »
  Potassium »
    PDB 6pcd-6qm2 »
      6qcz »

Potassium in PDB 6qcz: MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)

Potassium Binding Sites:

The binding sites of Potassium atom in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) (pdb code 6qcz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation), PDB code: 6qcz:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6qcz

Go back to Potassium Binding Sites List in 6qcz
Potassium binding site 1 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K401

b:0.4
occ:1.00
 O D:THR176 2.6 78.7 1.0
O A:THR175 2.7 88.2 1.0
O B:THR175 2.7 89.0 1.0
O B:THR176 2.7 80.8 1.0
O C:THR176 2.7 78.7 1.0
O A:THR176 2.7 79.5 1.0
O C:THR175 2.7 88.4 1.0
O D:THR175 2.8 88.2 1.0
HA B:THR176 3.2 80.8 1.0
HA A:THR176 3.2 79.5 1.0
HA C:THR176 3.2 78.7 1.0
HA D:THR176 3.2 78.7 1.0
C B:THR176 3.4 80.8 1.0
C D:THR176 3.4 78.7 1.0
C A:THR176 3.4 79.5 1.0
C C:THR176 3.4 78.7 1.0
CA B:THR176 3.7 80.8 1.0
CA A:THR176 3.7 79.5 1.0
CA C:THR176 3.7 78.7 1.0
CA D:THR176 3.7 78.7 1.0
C B:THR175 3.7 89.0 1.0
C A:THR175 3.7 88.2 1.0
C C:THR175 3.8 88.4 1.0
C D:THR175 3.8 88.2 1.0
HG22 A:THR175 4.0 88.2 1.0
HG22 B:THR175 4.0 89.0 1.0
HG22 C:THR175 4.0 88.4 1.0
HG22 D:THR175 4.1 88.2 1.0
N B:THR176 4.2 80.8 1.0
N A:THR176 4.2 79.5 1.0
N C:THR176 4.2 78.7 1.0
N D:THR176 4.2 78.7 1.0
HA3 D:GLY177 4.5 75.7 1.0
HA3 B:GLY177 4.5 76.9 1.0
HA3 C:GLY177 4.5 75.3 1.0
HA3 A:GLY177 4.5 77.3 1.0
N B:GLY177 4.5 76.9 1.0
N D:GLY177 4.5 75.7 1.0
N A:GLY177 4.5 77.3 1.0
N C:GLY177 4.5 75.3 1.0
HG23 D:THR176 4.6 78.7 1.0
HG23 B:THR176 4.6 80.8 1.0
HG23 C:THR176 4.6 78.7 1.0
HG23 A:THR176 4.6 79.5 1.0
CG2 A:THR175 4.9 88.2 1.0
CG2 B:THR175 4.9 89.0 1.0
CG2 C:THR175 4.9 88.4 1.0
H B:THR176 5.0 80.8 1.0
CA D:GLY177 5.0 75.7 1.0
CG2 D:THR175 5.0 88.2 1.0
H A:THR176 5.0 79.5 1.0

Potassium binding site 2 out of 2 in 6qcz

Go back to Potassium Binding Sites List in 6qcz
Potassium binding site 2 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K401

b:0.3
occ:1.00
 O D:TYR178 2.7 77.1 1.0
O A:GLY177 2.7 77.3 1.0
O C:TYR178 2.7 77.7 1.0
O B:TYR178 2.7 80.1 1.0
O B:GLY177 2.7 76.9 1.0
O A:TYR178 2.7 79.4 1.0
O C:GLY177 2.7 75.3 1.0
O D:GLY177 2.8 75.7 1.0
C D:TYR178 3.5 77.1 1.0
C B:TYR178 3.5 80.1 1.0
C C:TYR178 3.5 77.7 1.0
C A:TYR178 3.5 79.4 1.0
C A:GLY177 3.8 77.3 1.0
C B:GLY177 3.8 76.9 1.0
C C:GLY177 3.8 75.3 1.0
HA A:TYR178 3.8 79.4 1.0
HA D:TYR178 3.8 77.1 1.0
HA C:TYR178 3.9 77.7 1.0
HA B:TYR178 3.9 80.1 1.0
HA3 D:GLY179 3.9 77.9 1.0
HA3 B:GLY179 3.9 78.9 1.0
C D:GLY177 3.9 75.7 1.0
HA3 C:GLY179 3.9 76.2 1.0
HA3 A:GLY179 3.9 81.5 1.0
CA A:TYR178 4.2 79.4 1.0
CA B:TYR178 4.2 80.1 1.0
CA C:TYR178 4.2 77.7 1.0
CA D:TYR178 4.2 77.1 1.0
N B:GLY179 4.4 78.9 1.0
N D:GLY179 4.4 77.9 1.0
N C:GLY179 4.4 76.2 1.0
N A:GLY179 4.4 81.5 1.0
N A:TYR178 4.5 79.4 1.0
N B:TYR178 4.5 80.1 1.0
N C:TYR178 4.5 77.7 1.0
N D:TYR178 4.5 77.1 1.0
CA D:GLY179 4.6 77.9 1.0
CA B:GLY179 4.6 78.9 1.0
CA C:GLY179 4.6 76.2 1.0
HA3 A:GLY177 4.6 77.3 1.0
HA3 B:GLY177 4.6 76.9 1.0
CA A:GLY179 4.6 81.5 1.0
HA3 C:GLY177 4.6 75.3 1.0
HA3 D:GLY177 4.7 75.7 1.0
CA B:GLY177 4.9 76.9 1.0
CA A:GLY177 4.9 77.3 1.0
CA C:GLY177 4.9 75.3 1.0
CA D:GLY177 4.9 75.7 1.0

Reference:

R.D.Righetto, N.Biyani, J.Kowal, M.Chami, H.Stahlberg. Retrieving High-Resolution Information From Disordered 2D Crystals By Single-Particle Cryo-Em. Nat Commun V. 10 1722 2019.
ISSN: ESSN 2041-1723
PubMed: 30979902
DOI: 10.1038/S41467-019-09661-5
Page generated: Mon Aug 12 17:19:23 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy