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Potassium in PDB 6qcz: MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)

Potassium Binding Sites:

The binding sites of Potassium atom in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) (pdb code 6qcz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation), PDB code: 6qcz:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 6qcz

Go back to Potassium Binding Sites List in 6qcz
Potassium binding site 1 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K401

b:0.4
occ:1.00
 O D:THR176 2.6 78.7 1.0
O A:THR175 2.7 88.2 1.0
O B:THR175 2.7 89.0 1.0
O B:THR176 2.7 80.8 1.0
O C:THR176 2.7 78.7 1.0
O A:THR176 2.7 79.5 1.0
O C:THR175 2.7 88.4 1.0
O D:THR175 2.8 88.2 1.0
HA B:THR176 3.2 80.8 1.0
HA A:THR176 3.2 79.5 1.0
HA C:THR176 3.2 78.7 1.0
HA D:THR176 3.2 78.7 1.0
C B:THR176 3.4 80.8 1.0
C D:THR176 3.4 78.7 1.0
C A:THR176 3.4 79.5 1.0
C C:THR176 3.4 78.7 1.0
CA B:THR176 3.7 80.8 1.0
CA A:THR176 3.7 79.5 1.0
CA C:THR176 3.7 78.7 1.0
CA D:THR176 3.7 78.7 1.0
C B:THR175 3.7 89.0 1.0
C A:THR175 3.7 88.2 1.0
C C:THR175 3.8 88.4 1.0
C D:THR175 3.8 88.2 1.0
HG22 A:THR175 4.0 88.2 1.0
HG22 B:THR175 4.0 89.0 1.0
HG22 C:THR175 4.0 88.4 1.0
HG22 D:THR175 4.1 88.2 1.0
N B:THR176 4.2 80.8 1.0
N A:THR176 4.2 79.5 1.0
N C:THR176 4.2 78.7 1.0
N D:THR176 4.2 78.7 1.0
HA3 D:GLY177 4.5 75.7 1.0
HA3 B:GLY177 4.5 76.9 1.0
HA3 C:GLY177 4.5 75.3 1.0
HA3 A:GLY177 4.5 77.3 1.0
N B:GLY177 4.5 76.9 1.0
N D:GLY177 4.5 75.7 1.0
N A:GLY177 4.5 77.3 1.0
N C:GLY177 4.5 75.3 1.0
HG23 D:THR176 4.6 78.7 1.0
HG23 B:THR176 4.6 80.8 1.0
HG23 C:THR176 4.6 78.7 1.0
HG23 A:THR176 4.6 79.5 1.0
CG2 A:THR175 4.9 88.2 1.0
CG2 B:THR175 4.9 89.0 1.0
CG2 C:THR175 4.9 88.4 1.0
H B:THR176 5.0 80.8 1.0
CA D:GLY177 5.0 75.7 1.0
CG2 D:THR175 5.0 88.2 1.0
H A:THR176 5.0 79.5 1.0

Potassium binding site 2 out of 2 in 6qcz

Go back to Potassium Binding Sites List in 6qcz
Potassium binding site 2 out of 2 in the MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of MLOK1 Model From Single Particle Analysis of 2D Crystals, Class 3 (Intermediate Extended Conformation) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K401

b:0.3
occ:1.00
 O D:TYR178 2.7 77.1 1.0
O A:GLY177 2.7 77.3 1.0
O C:TYR178 2.7 77.7 1.0
O B:TYR178 2.7 80.1 1.0
O B:GLY177 2.7 76.9 1.0
O A:TYR178 2.7 79.4 1.0
O C:GLY177 2.7 75.3 1.0
O D:GLY177 2.8 75.7 1.0
C D:TYR178 3.5 77.1 1.0
C B:TYR178 3.5 80.1 1.0
C C:TYR178 3.5 77.7 1.0
C A:TYR178 3.5 79.4 1.0
C A:GLY177 3.8 77.3 1.0
C B:GLY177 3.8 76.9 1.0
C C:GLY177 3.8 75.3 1.0
HA A:TYR178 3.8 79.4 1.0
HA D:TYR178 3.8 77.1 1.0
HA C:TYR178 3.9 77.7 1.0
HA B:TYR178 3.9 80.1 1.0
HA3 D:GLY179 3.9 77.9 1.0
HA3 B:GLY179 3.9 78.9 1.0
C D:GLY177 3.9 75.7 1.0
HA3 C:GLY179 3.9 76.2 1.0
HA3 A:GLY179 3.9 81.5 1.0
CA A:TYR178 4.2 79.4 1.0
CA B:TYR178 4.2 80.1 1.0
CA C:TYR178 4.2 77.7 1.0
CA D:TYR178 4.2 77.1 1.0
N B:GLY179 4.4 78.9 1.0
N D:GLY179 4.4 77.9 1.0
N C:GLY179 4.4 76.2 1.0
N A:GLY179 4.4 81.5 1.0
N A:TYR178 4.5 79.4 1.0
N B:TYR178 4.5 80.1 1.0
N C:TYR178 4.5 77.7 1.0
N D:TYR178 4.5 77.1 1.0
CA D:GLY179 4.6 77.9 1.0
CA B:GLY179 4.6 78.9 1.0
CA C:GLY179 4.6 76.2 1.0
HA3 A:GLY177 4.6 77.3 1.0
HA3 B:GLY177 4.6 76.9 1.0
CA A:GLY179 4.6 81.5 1.0
HA3 C:GLY177 4.6 75.3 1.0
HA3 D:GLY177 4.7 75.7 1.0
CA B:GLY177 4.9 76.9 1.0
CA A:GLY177 4.9 77.3 1.0
CA C:GLY177 4.9 75.3 1.0
CA D:GLY177 4.9 75.7 1.0

Reference:

R.D.Righetto, N.Biyani, J.Kowal, M.Chami, H.Stahlberg. Retrieving High-Resolution Information From Disordered 2D Crystals By Single-Particle Cryo-Em. Nat Commun V. 10 1722 2019.
ISSN: ESSN 2041-1723
PubMed: 30979902
DOI: 10.1038/S41467-019-09661-5
Page generated: Mon Aug 12 17:19:23 2024

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