Potassium in PDB 6pht: Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
Protein crystallography data
The structure of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid, PDB code: 6pht
was solved by
J.D.Osko,
D.W.Christianson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
65.44 /
1.80
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
65.630,
163.480,
65.720,
90.00,
94.33,
90.00
|
R / Rfree (%)
|
19.4 /
22.6
|
Other elements in 6pht:
The structure of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid also contains other interesting chemical elements:
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
(pdb code 6pht). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the
Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid, PDB code: 6pht:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Potassium binding site 1 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 1 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_01.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K402
b:14.3
occ:1.00
|
O
|
A:VAL212
|
2.7
|
12.1
|
1.0
|
O
|
A:HOH523
|
2.7
|
10.0
|
1.0
|
O
|
A:HOH533
|
2.8
|
10.3
|
1.0
|
O
|
A:PHE206
|
2.8
|
10.6
|
1.0
|
O
|
A:ARG209
|
2.9
|
14.3
|
1.0
|
O
|
A:TYR243
|
3.0
|
9.8
|
1.0
|
C
|
A:PHE206
|
3.7
|
11.1
|
1.0
|
C
|
A:TYR243
|
3.7
|
10.8
|
1.0
|
CB
|
A:PHE206
|
3.8
|
9.9
|
1.0
|
CB
|
A:TYR243
|
3.8
|
16.5
|
1.0
|
OG1
|
A:THR214
|
3.8
|
12.1
|
1.0
|
C
|
A:VAL212
|
3.9
|
11.5
|
1.0
|
C
|
A:ARG209
|
4.1
|
16.5
|
1.0
|
N
|
A:THR214
|
4.4
|
9.5
|
1.0
|
CA
|
A:PHE206
|
4.4
|
12.1
|
1.0
|
CA
|
A:TYR243
|
4.4
|
12.0
|
1.0
|
CA
|
A:TYR207
|
4.5
|
10.2
|
1.0
|
N
|
A:TYR207
|
4.5
|
12.4
|
1.0
|
N
|
A:ARG209
|
4.5
|
15.0
|
1.0
|
O
|
A:TYR207
|
4.5
|
12.4
|
1.0
|
N
|
A:ASN244
|
4.6
|
11.1
|
1.0
|
C
|
A:TYR207
|
4.6
|
12.5
|
1.0
|
CA
|
A:LEU213
|
4.6
|
10.8
|
1.0
|
N
|
A:LEU213
|
4.7
|
7.6
|
1.0
|
CA
|
A:ARG209
|
4.7
|
12.8
|
1.0
|
CG2
|
A:THR214
|
4.8
|
8.4
|
1.0
|
CB
|
A:THR214
|
4.8
|
7.2
|
1.0
|
O
|
A:GLY240
|
4.8
|
16.3
|
1.0
|
CB
|
A:ARG209
|
4.9
|
12.6
|
1.0
|
C
|
A:LEU213
|
4.9
|
9.7
|
1.0
|
CA
|
A:VAL212
|
4.9
|
13.4
|
1.0
|
CB
|
A:ASN244
|
5.0
|
12.7
|
1.0
|
CA
|
A:ASN244
|
5.0
|
14.7
|
1.0
|
|
Potassium binding site 2 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 2 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_02.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K403
b:7.0
occ:0.54
|
OD1
|
A:ASP193
|
2.4
|
9.6
|
1.0
|
O
|
A:LEU217
|
2.5
|
8.6
|
1.0
|
O
|
A:HIS197
|
2.5
|
8.6
|
1.0
|
O
|
A:ASP195
|
2.5
|
11.0
|
1.0
|
OG
|
A:SER216
|
2.6
|
8.5
|
1.0
|
O
|
A:ASP193
|
3.1
|
7.7
|
1.0
|
CG
|
A:ASP193
|
3.2
|
13.5
|
1.0
|
C
|
A:HIS197
|
3.5
|
7.5
|
1.0
|
C
|
A:ASP195
|
3.5
|
7.7
|
1.0
|
C
|
A:LEU217
|
3.5
|
6.4
|
1.0
|
C
|
A:ASP193
|
3.6
|
10.5
|
1.0
|
CB
|
A:ASP193
|
3.7
|
10.5
|
1.0
|
N
|
A:ASP195
|
3.8
|
7.6
|
1.0
|
CB
|
A:HIS218
|
3.8
|
5.8
|
1.0
|
CB
|
A:SER216
|
3.9
|
8.1
|
1.0
|
N
|
A:LEU217
|
3.9
|
5.6
|
1.0
|
ND1
|
A:HIS218
|
4.1
|
6.7
|
1.0
|
CA
|
A:ASP195
|
4.1
|
8.9
|
1.0
|
OD2
|
A:ASP193
|
4.1
|
8.9
|
1.0
|
CA
|
A:HIS198
|
4.1
|
7.6
|
1.0
|
C
|
A:VAL194
|
4.1
|
11.6
|
1.0
|
N
|
A:HIS198
|
4.2
|
6.9
|
1.0
|
N
|
A:VAL194
|
4.2
|
7.9
|
1.0
|
N
|
A:GLY199
|
4.2
|
4.3
|
1.0
|
N
|
A:HIS197
|
4.3
|
7.7
|
1.0
|
CA
|
A:ASP193
|
4.3
|
8.9
|
1.0
|
CA
|
A:SER216
|
4.3
|
8.1
|
1.0
|
CB
|
A:ASP195
|
4.3
|
9.3
|
1.0
|
CA
|
A:VAL194
|
4.4
|
8.7
|
1.0
|
CA
|
A:LEU217
|
4.4
|
5.0
|
1.0
|
CA
|
A:HIS218
|
4.4
|
6.6
|
1.0
|
CG
|
A:HIS218
|
4.4
|
6.2
|
1.0
|
O
|
A:HOH610
|
4.4
|
10.2
|
1.0
|
C
|
A:PHE196
|
4.4
|
8.5
|
1.0
|
N
|
A:HIS218
|
4.4
|
5.0
|
1.0
|
C
|
A:SER216
|
4.4
|
5.9
|
1.0
|
C
|
A:HIS198
|
4.5
|
7.5
|
1.0
|
CA
|
A:HIS197
|
4.5
|
7.0
|
1.0
|
N
|
A:PHE196
|
4.6
|
8.3
|
1.0
|
O
|
A:PHE196
|
4.7
|
10.1
|
1.0
|
O
|
A:VAL194
|
4.8
|
9.3
|
1.0
|
CE1
|
A:HIS158
|
4.9
|
8.5
|
1.0
|
CA
|
A:PHE196
|
5.0
|
8.0
|
1.0
|
ND1
|
A:HIS158
|
5.0
|
7.8
|
1.0
|
OD1
|
A:ASP195
|
5.0
|
6.7
|
1.0
|
|
Potassium binding site 3 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 3 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_03.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K402
b:14.7
occ:1.00
|
O
|
B:VAL212
|
2.7
|
10.9
|
1.0
|
O
|
B:HOH528
|
2.7
|
13.4
|
1.0
|
O
|
B:PHE206
|
2.7
|
16.4
|
1.0
|
O
|
B:ARG209
|
2.9
|
13.7
|
1.0
|
O
|
B:TYR243
|
2.9
|
13.6
|
1.0
|
O
|
B:HOH557
|
3.0
|
11.8
|
1.0
|
C
|
B:PHE206
|
3.7
|
10.6
|
1.0
|
C
|
B:TYR243
|
3.7
|
15.0
|
1.0
|
CB
|
B:TYR243
|
3.8
|
14.6
|
1.0
|
CB
|
B:PHE206
|
3.9
|
8.1
|
1.0
|
C
|
B:VAL212
|
3.9
|
13.4
|
1.0
|
OG1
|
B:THR214
|
3.9
|
11.4
|
1.0
|
C
|
B:ARG209
|
4.0
|
14.2
|
1.0
|
N
|
B:THR214
|
4.4
|
11.2
|
1.0
|
CA
|
B:TYR243
|
4.4
|
12.5
|
1.0
|
CA
|
B:PHE206
|
4.4
|
8.8
|
1.0
|
O
|
B:TYR207
|
4.4
|
10.8
|
1.0
|
CA
|
B:TYR207
|
4.5
|
15.3
|
1.0
|
N
|
B:ARG209
|
4.5
|
15.5
|
1.0
|
CA
|
B:LEU213
|
4.5
|
15.2
|
1.0
|
N
|
B:TYR207
|
4.5
|
9.9
|
1.0
|
N
|
B:ASN244
|
4.5
|
13.7
|
1.0
|
C
|
B:TYR207
|
4.5
|
15.7
|
1.0
|
CG2
|
B:THR214
|
4.7
|
11.2
|
1.0
|
N
|
B:LEU213
|
4.7
|
12.0
|
1.0
|
CA
|
B:ARG209
|
4.7
|
10.6
|
1.0
|
O
|
B:GLY240
|
4.8
|
14.5
|
1.0
|
CB
|
B:THR214
|
4.9
|
10.0
|
1.0
|
C
|
B:LEU213
|
4.9
|
13.4
|
1.0
|
CB
|
B:ARG209
|
4.9
|
11.5
|
1.0
|
CB
|
B:ASN244
|
4.9
|
11.1
|
1.0
|
CA
|
B:VAL212
|
4.9
|
13.2
|
1.0
|
CA
|
B:ASN244
|
5.0
|
10.6
|
1.0
|
|
Potassium binding site 4 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 4 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_04.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:K403
b:8.4
occ:0.56
|
O
|
B:ASP195
|
2.4
|
9.2
|
1.0
|
O
|
B:LEU217
|
2.4
|
7.1
|
1.0
|
OD1
|
B:ASP193
|
2.4
|
9.6
|
1.0
|
O
|
B:HIS197
|
2.6
|
7.3
|
1.0
|
OG
|
B:SER216
|
2.6
|
7.9
|
1.0
|
O
|
B:ASP193
|
2.9
|
10.1
|
1.0
|
CG
|
B:ASP193
|
3.3
|
14.9
|
1.0
|
C
|
B:ASP195
|
3.5
|
9.6
|
1.0
|
C
|
B:ASP193
|
3.5
|
10.2
|
1.0
|
C
|
B:LEU217
|
3.5
|
8.4
|
1.0
|
C
|
B:HIS197
|
3.6
|
6.3
|
1.0
|
N
|
B:ASP195
|
3.8
|
6.8
|
1.0
|
CB
|
B:ASP193
|
3.8
|
11.1
|
1.0
|
N
|
B:LEU217
|
3.8
|
9.4
|
1.0
|
CB
|
B:SER216
|
3.9
|
7.8
|
1.0
|
CB
|
B:HIS218
|
3.9
|
9.9
|
1.0
|
CA
|
B:ASP195
|
4.0
|
9.4
|
1.0
|
C
|
B:VAL194
|
4.1
|
7.3
|
1.0
|
N
|
B:VAL194
|
4.1
|
7.8
|
1.0
|
OD2
|
B:ASP193
|
4.2
|
11.7
|
1.0
|
N
|
B:HIS197
|
4.2
|
7.2
|
1.0
|
ND1
|
B:HIS218
|
4.2
|
7.9
|
1.0
|
O
|
B:HOH589
|
4.3
|
7.0
|
1.0
|
CA
|
B:HIS198
|
4.3
|
8.1
|
1.0
|
CA
|
B:ASP193
|
4.3
|
8.6
|
1.0
|
CA
|
B:SER216
|
4.3
|
7.5
|
1.0
|
N
|
B:HIS198
|
4.3
|
6.2
|
1.0
|
CA
|
B:VAL194
|
4.3
|
7.2
|
1.0
|
N
|
B:GLY199
|
4.3
|
6.4
|
1.0
|
CB
|
B:ASP195
|
4.3
|
10.0
|
1.0
|
CA
|
B:LEU217
|
4.3
|
9.0
|
1.0
|
C
|
B:SER216
|
4.4
|
10.4
|
1.0
|
CA
|
B:HIS218
|
4.4
|
9.0
|
1.0
|
C
|
B:PHE196
|
4.4
|
9.3
|
1.0
|
N
|
B:HIS218
|
4.4
|
9.1
|
1.0
|
CA
|
B:HIS197
|
4.5
|
7.4
|
1.0
|
CG
|
B:HIS218
|
4.5
|
7.8
|
1.0
|
N
|
B:PHE196
|
4.6
|
5.6
|
1.0
|
C
|
B:HIS198
|
4.6
|
9.2
|
1.0
|
O
|
B:VAL194
|
4.8
|
10.1
|
1.0
|
O
|
B:PHE196
|
4.8
|
10.2
|
1.0
|
CE1
|
B:HIS158
|
4.9
|
9.1
|
1.0
|
CA
|
B:PHE196
|
4.9
|
7.6
|
1.0
|
ND1
|
B:HIS158
|
4.9
|
9.6
|
1.0
|
OD1
|
B:ASP195
|
4.9
|
10.2
|
1.0
|
|
Potassium binding site 5 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 5 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_05.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K402
b:10.3
occ:1.00
|
O
|
C:PHE206
|
2.7
|
9.8
|
1.0
|
O
|
C:VAL212
|
2.7
|
13.8
|
1.0
|
O
|
C:HOH547
|
2.8
|
10.9
|
1.0
|
O
|
C:ARG209
|
2.8
|
12.6
|
1.0
|
O
|
C:HOH522
|
2.9
|
10.3
|
1.0
|
O
|
C:TYR243
|
2.9
|
9.6
|
1.0
|
C
|
C:PHE206
|
3.6
|
9.2
|
1.0
|
C
|
C:TYR243
|
3.7
|
8.2
|
1.0
|
CB
|
C:PHE206
|
3.8
|
8.6
|
1.0
|
OG1
|
C:THR214
|
3.8
|
9.6
|
1.0
|
CB
|
C:TYR243
|
3.9
|
10.8
|
1.0
|
C
|
C:VAL212
|
3.9
|
12.0
|
1.0
|
C
|
C:ARG209
|
4.0
|
15.6
|
1.0
|
N
|
C:THR214
|
4.3
|
10.7
|
1.0
|
CA
|
C:PHE206
|
4.3
|
11.9
|
1.0
|
CA
|
C:TYR207
|
4.4
|
10.4
|
1.0
|
N
|
C:TYR207
|
4.4
|
9.5
|
1.0
|
CA
|
C:TYR243
|
4.5
|
13.4
|
1.0
|
N
|
C:ARG209
|
4.5
|
13.2
|
1.0
|
CA
|
C:LEU213
|
4.5
|
13.4
|
1.0
|
O
|
C:TYR207
|
4.5
|
11.2
|
1.0
|
N
|
C:ASN244
|
4.5
|
11.7
|
1.0
|
C
|
C:TYR207
|
4.5
|
10.9
|
1.0
|
CA
|
C:ARG209
|
4.7
|
13.8
|
1.0
|
N
|
C:LEU213
|
4.7
|
8.8
|
1.0
|
CG2
|
C:THR214
|
4.7
|
8.9
|
1.0
|
O
|
C:GLY240
|
4.7
|
9.4
|
1.0
|
CB
|
C:THR214
|
4.8
|
8.1
|
1.0
|
C
|
C:LEU213
|
4.8
|
10.7
|
1.0
|
CB
|
C:ARG209
|
4.8
|
9.2
|
1.0
|
CB
|
C:ASN244
|
4.9
|
11.9
|
1.0
|
CA
|
C:ASN244
|
4.9
|
11.9
|
1.0
|
CA
|
C:GLY240
|
5.0
|
13.4
|
1.0
|
|
Potassium binding site 6 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 6 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_06.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K403
b:7.2
occ:0.53
|
O
|
C:ASP195
|
2.4
|
5.9
|
1.0
|
O
|
C:LEU217
|
2.4
|
7.6
|
1.0
|
OD1
|
C:ASP193
|
2.5
|
8.9
|
1.0
|
O
|
C:HIS197
|
2.6
|
7.6
|
1.0
|
OG
|
C:SER216
|
2.8
|
7.7
|
1.0
|
O
|
C:ASP193
|
3.0
|
8.5
|
1.0
|
CG
|
C:ASP193
|
3.2
|
8.5
|
1.0
|
C
|
C:ASP195
|
3.4
|
6.9
|
1.0
|
C
|
C:LEU217
|
3.5
|
7.7
|
1.0
|
C
|
C:ASP193
|
3.5
|
6.8
|
1.0
|
C
|
C:HIS197
|
3.6
|
6.5
|
1.0
|
N
|
C:ASP195
|
3.7
|
8.5
|
1.0
|
CB
|
C:ASP193
|
3.7
|
6.7
|
1.0
|
CB
|
C:HIS218
|
3.9
|
5.3
|
1.0
|
N
|
C:LEU217
|
3.9
|
6.5
|
1.0
|
CA
|
C:ASP195
|
4.0
|
7.0
|
1.0
|
C
|
C:VAL194
|
4.0
|
7.6
|
1.0
|
CB
|
C:SER216
|
4.1
|
6.3
|
1.0
|
N
|
C:VAL194
|
4.1
|
8.4
|
1.0
|
OD2
|
C:ASP193
|
4.1
|
7.4
|
1.0
|
CB
|
C:ASP195
|
4.2
|
7.5
|
1.0
|
ND1
|
C:HIS218
|
4.2
|
7.7
|
1.0
|
CA
|
C:ASP193
|
4.2
|
6.5
|
1.0
|
N
|
C:HIS197
|
4.3
|
7.0
|
1.0
|
CA
|
C:VAL194
|
4.3
|
8.8
|
1.0
|
CA
|
C:HIS198
|
4.3
|
3.7
|
1.0
|
O
|
C:HOH603
|
4.3
|
7.0
|
1.0
|
N
|
C:GLY199
|
4.3
|
5.9
|
1.0
|
CA
|
C:LEU217
|
4.4
|
6.9
|
1.0
|
N
|
C:HIS198
|
4.4
|
3.6
|
1.0
|
CA
|
C:HIS218
|
4.4
|
7.2
|
1.0
|
CA
|
C:SER216
|
4.4
|
4.4
|
1.0
|
N
|
C:HIS218
|
4.4
|
5.8
|
1.0
|
C
|
C:PHE196
|
4.4
|
6.1
|
1.0
|
C
|
C:SER216
|
4.5
|
6.3
|
1.0
|
CG
|
C:HIS218
|
4.5
|
6.4
|
1.0
|
N
|
C:PHE196
|
4.5
|
5.9
|
1.0
|
CA
|
C:HIS197
|
4.6
|
5.6
|
1.0
|
C
|
C:HIS198
|
4.6
|
6.2
|
1.0
|
O
|
C:VAL194
|
4.7
|
7.5
|
1.0
|
O
|
C:PHE196
|
4.8
|
5.9
|
1.0
|
CE1
|
C:HIS158
|
4.9
|
6.7
|
1.0
|
CA
|
C:PHE196
|
4.9
|
7.6
|
1.0
|
OD1
|
C:ASP195
|
4.9
|
6.7
|
1.0
|
ND1
|
C:HIS158
|
4.9
|
6.2
|
1.0
|
|
Potassium binding site 7 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 7 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_07.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K402
b:14.9
occ:1.00
|
O
|
D:VAL212
|
2.7
|
13.0
|
1.0
|
O
|
D:PHE206
|
2.7
|
12.5
|
1.0
|
O
|
D:HOH546
|
2.7
|
15.0
|
1.0
|
O
|
D:ARG209
|
2.8
|
17.6
|
1.0
|
O
|
D:TYR243
|
2.8
|
14.6
|
1.0
|
O
|
D:HOH509
|
3.1
|
13.8
|
1.0
|
C
|
D:PHE206
|
3.7
|
14.8
|
1.0
|
C
|
D:TYR243
|
3.7
|
15.4
|
1.0
|
CB
|
D:TYR243
|
3.7
|
11.7
|
1.0
|
OG1
|
D:THR214
|
3.8
|
12.3
|
1.0
|
CB
|
D:PHE206
|
3.9
|
10.6
|
1.0
|
C
|
D:VAL212
|
3.9
|
14.6
|
1.0
|
C
|
D:ARG209
|
4.0
|
14.3
|
1.0
|
CA
|
D:TYR243
|
4.3
|
13.9
|
1.0
|
N
|
D:THR214
|
4.4
|
10.8
|
1.0
|
N
|
D:ARG209
|
4.4
|
15.6
|
1.0
|
CA
|
D:PHE206
|
4.4
|
9.7
|
1.0
|
CA
|
D:TYR207
|
4.5
|
14.9
|
1.0
|
N
|
D:TYR207
|
4.5
|
12.4
|
1.0
|
N
|
D:ASN244
|
4.5
|
11.2
|
1.0
|
CA
|
D:LEU213
|
4.5
|
10.5
|
1.0
|
C
|
D:TYR207
|
4.6
|
13.3
|
1.0
|
CA
|
D:ARG209
|
4.6
|
16.4
|
1.0
|
O
|
D:TYR207
|
4.6
|
15.1
|
1.0
|
N
|
D:LEU213
|
4.7
|
10.9
|
1.0
|
CG2
|
D:THR214
|
4.7
|
10.6
|
1.0
|
O
|
D:GLY240
|
4.8
|
12.5
|
1.0
|
CB
|
D:THR214
|
4.8
|
11.1
|
1.0
|
CB
|
D:ARG209
|
4.8
|
10.5
|
1.0
|
C
|
D:LEU213
|
4.9
|
12.3
|
1.0
|
CA
|
D:VAL212
|
4.9
|
13.9
|
1.0
|
CA
|
D:ASN244
|
5.0
|
12.6
|
1.0
|
|
Potassium binding site 8 out
of 8 in 6pht
Go back to
Potassium Binding Sites List in 6pht
Potassium binding site 8 out
of 8 in the Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid
![](/pictures/K/pdb/ph/6pht-K-sphere_08.jpg) Mono view
![](/pictures/K/pdb/ph/6pht-K-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Crystal Structure of Marinobacter Subterrani Acetylpolyamine Amidohydrolase (Msapah) Complexed with 5-[(3-Aminopropyl) Amino]Pentylboronic Acid within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:K403
b:8.2
occ:0.56
|
O
|
D:ASP195
|
2.4
|
11.5
|
1.0
|
O
|
D:LEU217
|
2.5
|
6.6
|
1.0
|
OD1
|
D:ASP193
|
2.5
|
9.8
|
1.0
|
O
|
D:HIS197
|
2.6
|
9.4
|
1.0
|
OG
|
D:SER216
|
2.7
|
8.1
|
1.0
|
O
|
D:ASP193
|
3.1
|
9.8
|
1.0
|
CG
|
D:ASP193
|
3.2
|
11.1
|
1.0
|
C
|
D:ASP195
|
3.5
|
9.9
|
1.0
|
C
|
D:LEU217
|
3.5
|
10.2
|
1.0
|
C
|
D:HIS197
|
3.5
|
9.5
|
1.0
|
C
|
D:ASP193
|
3.6
|
8.9
|
1.0
|
N
|
D:ASP195
|
3.7
|
9.0
|
1.0
|
CB
|
D:ASP193
|
3.7
|
10.1
|
1.0
|
N
|
D:LEU217
|
3.8
|
8.2
|
1.0
|
CB
|
D:HIS218
|
3.9
|
8.1
|
1.0
|
CB
|
D:SER216
|
3.9
|
8.2
|
1.0
|
CA
|
D:ASP195
|
4.0
|
10.6
|
1.0
|
OD2
|
D:ASP193
|
4.1
|
8.7
|
1.0
|
C
|
D:VAL194
|
4.1
|
13.9
|
1.0
|
N
|
D:VAL194
|
4.1
|
8.9
|
1.0
|
CB
|
D:ASP195
|
4.2
|
9.2
|
1.0
|
ND1
|
D:HIS218
|
4.2
|
8.4
|
1.0
|
CA
|
D:HIS198
|
4.2
|
6.7
|
1.0
|
N
|
D:HIS197
|
4.2
|
5.3
|
1.0
|
N
|
D:HIS198
|
4.3
|
6.6
|
1.0
|
CA
|
D:ASP193
|
4.3
|
7.4
|
1.0
|
CA
|
D:VAL194
|
4.3
|
9.1
|
1.0
|
CA
|
D:LEU217
|
4.3
|
10.5
|
1.0
|
N
|
D:GLY199
|
4.4
|
10.8
|
1.0
|
CA
|
D:SER216
|
4.4
|
6.6
|
1.0
|
CA
|
D:HIS218
|
4.4
|
9.4
|
1.0
|
N
|
D:HIS218
|
4.4
|
8.0
|
1.0
|
C
|
D:PHE196
|
4.4
|
8.6
|
1.0
|
O
|
D:HOH584
|
4.5
|
7.6
|
1.0
|
C
|
D:SER216
|
4.5
|
8.1
|
1.0
|
CG
|
D:HIS218
|
4.5
|
9.1
|
1.0
|
CA
|
D:HIS197
|
4.5
|
8.4
|
1.0
|
C
|
D:HIS198
|
4.6
|
8.5
|
1.0
|
N
|
D:PHE196
|
4.6
|
6.5
|
1.0
|
O
|
D:PHE196
|
4.8
|
10.7
|
1.0
|
O
|
D:VAL194
|
4.8
|
10.1
|
1.0
|
CE1
|
D:HIS158
|
4.9
|
10.4
|
1.0
|
ND1
|
D:HIS158
|
4.9
|
7.6
|
1.0
|
CA
|
D:PHE196
|
5.0
|
7.9
|
1.0
|
OD1
|
D:ASP195
|
5.0
|
10.5
|
1.0
|
|
Reference:
J.D.Osko,
B.W.Roose,
S.A.Shinsky,
D.W.Christianson.
Structure and Function of the Acetylpolyamine Amidohydrolase From the Deep Earth Halophilemarinobacter Subterrani. Biochemistry V. 58 3755 2019.
ISSN: ISSN 0006-2960
PubMed: 31436969
DOI: 10.1021/ACS.BIOCHEM.9B00582
Page generated: Mon Aug 12 17:07:34 2024
|