Atomistry » Potassium » PDB 6f3o-6h6x » 6h6v
Atomistry »
  Potassium »
    PDB 6f3o-6h6x »
      6h6v »

Potassium in PDB 6h6v: Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn

Protein crystallography data

The structure of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn, PDB code: 6h6v was solved by K.A.P.Payne, D.Leys, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.20 / 2.66
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.910, 139.250, 136.880, 90.00, 93.74, 90.00
R / Rfree (%) 19.9 / 23.6

Other elements in 6h6v:

The structure of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn also contains other interesting chemical elements:

Manganese (Mn) 6 atoms
Calcium (Ca) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn (pdb code 6h6v). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 6 binding sites of Potassium where determined in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn, PDB code: 6h6v:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6;

Potassium binding site 1 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 1 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K502

b:56.2
occ:1.00
 O5' A:FMN501 2.5 34.5 1.0
OE2 A:GLU210 2.6 43.4 1.0
O3P A:FMN501 2.7 39.8 1.0
O A:SER200 2.7 44.0 1.0
O A:HOH619 2.9 30.1 1.0
O A:VAL148 3.0 37.8 1.0
P A:FMN501 3.1 41.9 1.0
O A:ALA202 3.1 49.4 1.0
O4' A:FMN501 3.2 42.3 1.0
CD A:GLU210 3.4 47.8 1.0
MN A:MN503 3.6 46.0 1.0
O2P A:FMN501 3.7 41.3 1.0
C4' A:FMN501 3.7 36.0 1.0
C5' A:FMN501 3.7 34.7 1.0
C A:SER200 3.8 45.3 1.0
CG A:GLU210 3.9 46.0 1.0
C A:VAL148 4.2 36.6 1.0
C A:ALA202 4.3 53.7 1.0
OE1 A:GLU210 4.3 50.8 1.0
O1P A:FMN501 4.5 36.3 1.0
N A:ALA202 4.5 50.6 1.0
C A:GLN201 4.5 42.4 1.0
CB A:SER149 4.6 38.9 1.0
OD1 A:ASN147 4.6 48.8 1.0
N A:GLN201 4.6 42.6 1.0
CA A:SER149 4.6 37.4 1.0
CA A:SER200 4.6 40.9 1.0
CA A:GLN201 4.6 41.5 1.0
ND2 A:ASN147 4.7 51.4 1.0
N A:SER149 4.9 36.5 1.0
O A:ALA199 4.9 35.8 1.0

Potassium binding site 2 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 2 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K502

b:44.1
occ:1.00
 O B:SER200 2.4 33.6 1.0
O5' B:FMN501 2.6 38.8 1.0
OE2 B:GLU210 2.6 27.4 1.0
O3P B:FMN501 2.7 40.2 1.0
O B:VAL148 2.8 37.5 1.0
O4' B:FMN501 3.1 43.6 1.0
O B:ALA202 3.1 47.6 1.0
O B:HOH624 3.3 42.2 1.0
P B:FMN501 3.3 40.6 1.0
CD B:GLU210 3.4 36.0 1.0
C B:SER200 3.5 34.5 1.0
C4' B:FMN501 3.6 40.7 1.0
MN B:MN503 3.6 35.6 1.0
C5' B:FMN501 3.7 40.7 1.0
CG B:GLU210 3.8 39.4 1.0
O2P B:FMN501 3.9 41.8 1.0
O B:HOH607 4.0 46.8 1.0
C B:VAL148 4.0 39.2 1.0
C B:ALA202 4.3 44.9 1.0
OE1 B:GLU210 4.3 38.7 1.0
CA B:SER200 4.3 36.1 1.0
N B:GLN201 4.4 36.4 1.0
N B:ALA202 4.4 36.5 1.0
C B:GLN201 4.4 33.7 1.0
CA B:GLN201 4.5 37.4 1.0
CA B:SER149 4.5 37.1 1.0
O1P B:FMN501 4.6 42.4 1.0
CB B:SER149 4.6 38.5 1.0
O B:ALA199 4.6 40.0 1.0
N B:SER149 4.8 38.7 1.0
ND2 B:ASN147 4.8 33.5 1.0
OD1 B:ASN147 4.8 28.4 1.0
CB B:GLU210 4.9 40.7 1.0
CA B:ALA202 4.9 39.5 1.0
O B:GLN201 5.0 30.3 1.0

Potassium binding site 3 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 3 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K502

b:53.6
occ:1.00
 OE2 C:GLU210 2.6 41.5 1.0
O C:SER200 2.7 39.9 1.0
O5' C:FMN501 2.7 44.7 1.0
O3P C:FMN501 2.8 43.6 1.0
O C:ALA202 3.0 50.7 1.0
O4' C:FMN501 3.0 38.3 1.0
O C:HOH621 3.0 24.4 1.0
O C:VAL148 3.1 46.8 1.0
P C:FMN501 3.1 45.1 1.0
O2P C:FMN501 3.3 39.9 1.0
MN C:MN503 3.5 42.1 1.0
CD C:GLU210 3.5 48.6 1.0
C4' C:FMN501 3.6 42.2 1.0
C5' C:FMN501 3.7 44.9 1.0
C C:SER200 3.7 42.5 1.0
CG C:GLU210 3.9 50.8 1.0
C C:ALA202 4.2 48.5 1.0
C C:VAL148 4.3 42.6 1.0
N C:ALA202 4.4 43.2 1.0
C C:GLN201 4.4 40.9 1.0
OE1 C:GLU210 4.4 45.9 1.0
N C:GLN201 4.5 43.5 1.0
O1P C:FMN501 4.5 45.4 1.0
CA C:GLN201 4.5 42.2 1.0
CA C:SER200 4.6 40.0 1.0
CB C:SER149 4.7 41.6 1.0
CA C:SER149 4.7 41.2 1.0
OD1 C:ASN147 4.7 30.3 1.0
O C:ALA199 4.8 42.4 1.0
ND2 C:ASN147 4.9 41.1 1.0
O C:GLN201 4.9 43.6 1.0
CA C:ALA202 4.9 45.2 1.0
N C:SER149 5.0 42.1 1.0
C3' C:FMN501 5.0 39.5 1.0

Potassium binding site 4 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 4 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K502

b:58.1
occ:1.00
 OE2 D:GLU210 2.6 48.1 1.0
O3P D:FMN501 2.6 41.1 1.0
O5' D:FMN501 2.6 34.8 1.0
O D:SER200 2.7 44.0 1.0
O D:VAL148 2.9 33.6 1.0
O D:ALA202 3.1 55.5 1.0
P D:FMN501 3.2 42.7 1.0
O D:HOH629 3.2 33.4 1.0
O4' D:FMN501 3.3 32.5 1.0
CD D:GLU210 3.4 50.4 1.0
MN D:MN503 3.5 40.5 1.0
O2P D:FMN501 3.7 38.7 1.0
C4' D:FMN501 3.8 35.0 1.0
C D:SER200 3.8 42.3 1.0
C5' D:FMN501 3.8 33.2 1.0
CG D:GLU210 3.9 50.1 1.0
C D:VAL148 4.1 37.1 1.0
OE1 D:GLU210 4.3 53.2 1.0
C D:ALA202 4.4 62.0 1.0
O1P D:FMN501 4.4 39.4 1.0
N D:ALA202 4.6 54.5 1.0
C D:GLN201 4.6 44.4 1.0
OD1 D:ASN147 4.6 41.1 1.0
CB D:SER149 4.6 37.8 1.0
CA D:SER149 4.6 37.0 1.0
N D:GLN201 4.6 45.7 1.0
CA D:SER200 4.6 39.8 1.0
ND2 D:ASN147 4.7 46.9 1.0
CA D:GLN201 4.7 43.5 1.0
N D:SER149 4.8 36.8 1.0
O D:ALA199 4.9 40.3 1.0
CG D:ASN147 5.0 43.2 1.0

Potassium binding site 5 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 5 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K502

b:46.7
occ:1.00
 O E:SER200 2.5 48.9 1.0
O5' E:FMN501 2.6 42.5 1.0
OE2 E:GLU210 2.8 57.6 1.0
O3P E:FMN501 2.9 45.3 1.0
O E:VAL148 2.9 44.2 1.0
O4' E:FMN501 3.1 50.4 1.0
O E:ALA202 3.1 59.2 1.0
P E:FMN501 3.3 46.5 1.0
O E:HOH627 3.4 45.4 1.0
C4' E:FMN501 3.5 41.3 1.0
C E:SER200 3.5 47.0 1.0
CD E:GLU210 3.5 58.4 1.0
C5' E:FMN501 3.6 43.5 1.0
MN E:MN503 3.7 47.2 1.0
O2P E:FMN501 3.8 43.0 1.0
CG E:GLU210 3.9 56.4 1.0
C E:VAL148 4.1 46.2 1.0
C E:ALA202 4.2 64.3 1.0
N E:ALA202 4.3 48.1 1.0
C E:GLN201 4.3 41.5 1.0
N E:GLN201 4.4 45.4 1.0
CA E:SER200 4.4 46.0 1.0
CA E:GLN201 4.4 42.3 1.0
OE1 E:GLU210 4.4 54.8 1.0
CA E:SER149 4.5 39.9 1.0
CB E:SER149 4.5 40.1 1.0
O1P E:FMN501 4.6 42.9 1.0
O E:ALA199 4.6 45.4 1.0
N E:SER149 4.8 42.4 1.0
ND2 E:ASN147 4.8 43.5 1.0
OD1 E:ASN147 4.9 52.6 1.0
O E:GLN201 4.9 39.7 1.0
CA E:ALA202 4.9 56.2 1.0
C3' E:FMN501 4.9 39.9 1.0

Potassium binding site 6 out of 6 in 6h6v

Go back to Potassium Binding Sites List in 6h6v
Potassium binding site 6 out of 6 in the Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Structure of the Ubid-Class Enzyme Hmff From Pelotomaculum Thermopropionicum in Complex with Fmn within 5.0Å range:
probe atom residue distance (Å) B Occ
F:K502

b:85.5
occ:1.00
 O3P F:FMN501 2.5 78.0 1.0
OE2 F:GLU210 2.6 75.4 1.0
O F:SER200 2.8 59.1 1.0
O F:ALA202 2.9 79.8 1.0
O5' F:FMN501 3.0 68.8 1.0
P F:FMN501 3.1 66.5 1.0
O2P F:FMN501 3.1 58.8 1.0
O F:VAL148 3.2 73.3 1.0
O4' F:FMN501 3.3 56.4 1.0
MN F:MN503 3.4 63.0 1.0
CD F:GLU210 3.5 76.9 1.0
C4' F:FMN501 3.7 58.8 1.0
C F:SER200 3.8 56.9 1.0
C5' F:FMN501 3.9 61.9 1.0
CG F:GLU210 4.0 79.8 1.0
C F:ALA202 4.1 79.7 1.0
N F:ALA202 4.4 67.2 1.0
C F:GLN201 4.4 58.8 1.0
C F:VAL148 4.4 75.3 1.0
OE1 F:GLU210 4.5 82.7 1.0
O1P F:FMN501 4.5 59.6 1.0
CA F:GLN201 4.6 58.2 1.0
N F:GLN201 4.6 62.3 1.0
OD1 F:ASN147 4.7 90.5 1.0
CA F:SER200 4.7 55.3 1.0
O F:ALA199 4.8 58.8 1.0
CB F:SER149 4.8 63.8 1.0
O F:GLN201 4.9 57.7 1.0
CA F:SER149 4.9 62.6 1.0
CA F:ALA202 4.9 71.9 1.0
ND2 F:ASN147 4.9 71.3 1.0

Reference:

K.A.P.Payne, S.A.Marshall, K.Fisher, M.J.Cliff, D.M.Cannas, C.Yan, D.J.Heyes, D.A.Parker, I.Larrosa, D.Leys. Enzymatic Carboxylation of 2-Furoic Acid Yields 2,5-Furandicarboxylic Acid (Fdca). Acs Catalysis V. 9 2854 2019.
ISSN: ESSN 2155-5435
PubMed: 31057985
DOI: 10.1021/ACSCATAL.8B04862
Page generated: Mon Aug 12 16:20:33 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy