Potassium in PDB 6gsh: Feline Calicivirus Strain F9

The binding sites of Potassium atom in the Feline Calicivirus Strain F9 (pdb code 6gsh). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Feline Calicivirus Strain F9, PDB code: 6gsh:
Jump to Potassium binding site number: 1; 2; 3;

Potassium binding site 1 out of 3 in the Feline Calicivirus Strain F9


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Feline Calicivirus Strain F9 within 5.0Å range: probe atom residue distance (Å) B Occ A:K701 b:35.0 occ:1.00 O A:LYS481 2.7 52.4 1.0 O A:GLN474 2.7 48.1 1.0 OE1 A:GLN474 2.8 48.1 1.0 OD2 A:ASP479 2.9 55.2 1.0 HB3 A:ASP479 3.1 55.2 1.0 CG A:ASP479 3.5 55.2 1.0 H A:LYS481 3.6 52.4 1.0 CB A:ASP479 3.7 55.2 1.0 CD A:GLN474 3.9 48.1 1.0 C A:LYS481 3.9 52.4 1.0 C A:GLN474 3.9 48.1 1.0 HB3 A:GLN474 4.0 48.1 1.0 HB2 A:ASP479 4.1 55.2 1.0 HA A:ARG475 4.1 48.0 1.0 H A:ALA476 4.2 53.1 1.0 HA A:ILE482 4.3 49.3 1.0 OG A:SER483 4.3 46.1 1.0 HE22 A:GLN474 4.4 48.1 1.0 N A:LYS481 4.4 52.4 1.0 HE1 A:HIS516 4.5 52.4 1.0 H A:LYS480 4.5 56.0 1.0 HA A:SER483 4.5 46.1 1.0 HD1 A:HIS516 4.5 52.4 1.0 OD1 A:ASP479 4.5 55.2 1.0 NE2 A:GLN474 4.6 48.1 1.0 C A:ILE482 4.6 49.3 1.0 N A:SER483 4.6 46.1 1.0 HB3 A:ALA476 4.6 53.1 1.0 CB A:GLN474 4.7 48.1 1.0 H A:SER483 4.7 46.1 1.0 N A:ALA476 4.7 53.1 1.0 CA A:LYS481 4.8 52.4 1.0 CA A:ARG475 4.8 48.0 1.0 HG A:SER483 4.8 46.1 1.0 CA A:ILE482 4.8 49.3 1.0 N A:ARG475 4.8 48.0 1.0 N A:ILE482 4.8 49.3 1.0 CA A:GLN474 4.9 48.1 1.0 N A:LYS480 4.9 56.0 1.0 CG A:GLN474 4.9 48.1 1.0 O A:ILE482 4.9 49.3 1.0 HB2 A:LYS481 4.9 52.4 1.0 CA A:SER483 5.0 46.1 1.0

Potassium binding site 2 out of 3 in the Feline Calicivirus Strain F9


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Feline Calicivirus Strain F9 within 5.0Å range: probe atom residue distance (Å) B Occ B:K701 b:30.9 occ:1.00 O B:LYS481 2.7 50.8 1.0 O B:GLN474 2.8 47.8 1.0 OE1 B:GLN474 2.9 47.8 1.0 HB3 B:ASP479 3.6 52.0 1.0 OD2 B:ASP479 3.8 52.0 1.0 HE1 B:HIS516 3.8 54.1 1.0 C B:GLN474 3.9 47.8 1.0 CD B:GLN474 3.9 47.8 1.0 HB3 B:GLN474 3.9 47.8 1.0 O B:ASP479 3.9 52.0 1.0 HA B:ARG475 3.9 46.6 1.0 OG B:SER483 3.9 45.2 1.0 C B:LYS481 4.0 50.8 1.0 HA B:SER483 4.0 45.2 1.0 CG B:ASP479 4.0 52.0 1.0 H B:LYS481 4.1 50.8 1.0 HG B:SER483 4.1 45.2 1.0 N B:SER483 4.3 45.2 1.0 CB B:ASP479 4.3 52.0 1.0 HA B:ILE482 4.3 46.3 1.0 H B:SER483 4.3 45.2 1.0 H B:ALA476 4.3 50.2 1.0 C B:ILE482 4.4 46.3 1.0 HE22 B:GLN474 4.4 47.8 1.0 HB2 B:LYS481 4.4 50.8 1.0 CE1 B:HIS516 4.5 54.1 1.0 CA B:SER483 4.5 45.2 1.0 NE2 B:GLN474 4.6 47.8 1.0 CB B:GLN474 4.6 47.8 1.0 N B:ARG475 4.6 46.6 1.0 CA B:ARG475 4.6 46.6 1.0 OD1 B:ASP479 4.7 52.0 1.0 H B:GLN474 4.7 47.8 1.0 ND1 B:HIS516 4.7 54.1 1.0 CA B:ILE482 4.7 46.3 1.0 CA B:GLN474 4.8 47.8 1.0 N B:LYS481 4.8 50.8 1.0 N B:ILE482 4.8 46.3 1.0 O B:ILE482 4.8 46.3 1.0 CG B:GLN474 4.8 47.8 1.0 CB B:SER483 4.8 45.2 1.0 C B:ASP479 4.9 52.0 1.0 CA B:LYS481 4.9 50.8 1.0 N B:ALA476 4.9 50.2 1.0 HB2 B:ASP479 4.9 52.0 1.0

Potassium binding site 3 out of 3 in the Feline Calicivirus Strain F9


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Feline Calicivirus Strain F9 within 5.0Å range: probe atom residue distance (Å) B Occ C:K701 b:25.6 occ:1.00 O C:GLN474 2.8 44.9 1.0 OE1 C:GLN474 2.9 44.9 1.0 O C:LYS481 2.9 47.3 1.0 O C:ASP479 2.9 48.5 1.0 HB3 C:ASP479 3.3 48.5 1.0 HE22 C:GLN474 3.6 44.9 1.0 CD C:GLN474 3.7 44.9 1.0 HA C:ARG475 3.7 44.5 1.0 CG C:ASP479 3.7 48.5 1.0 OD2 C:ASP479 3.8 48.5 1.0 NE2 C:GLN474 3.9 44.9 1.0 HE1 C:HIS516 3.9 49.4 1.0 CB C:ASP479 4.0 48.5 1.0 C C:ASP479 4.0 48.5 1.0 C C:GLN474 4.0 44.9 1.0 HG C:SER483 4.1 44.4 1.0 C C:LYS481 4.1 47.3 1.0 OG C:SER483 4.1 44.4 1.0 OD1 C:ASP479 4.1 48.5 1.0 HD1 C:HIS516 4.3 49.4 1.0 H C:ALA476 4.4 48.3 1.0 HA C:ILE482 4.4 45.1 1.0 HA C:SER483 4.5 44.4 1.0 CA C:ARG475 4.5 44.5 1.0 HB3 C:GLN474 4.5 44.9 1.0 H C:LYS481 4.5 47.3 1.0 CE1 C:HIS516 4.6 49.4 1.0 CA C:ASP479 4.6 48.5 1.0 N C:LYS481 4.6 47.3 1.0 HE21 C:GLN474 4.7 44.9 1.0 N C:SER483 4.7 44.4 1.0 N C:ARG475 4.7 44.5 1.0 C C:ILE482 4.7 45.1 1.0 ND1 C:HIS516 4.7 49.4 1.0 HB2 C:ASP479 4.8 48.5 1.0 N C:ALA476 4.8 48.3 1.0 O C:LEU473 4.8 42.0 1.0 C C:ARG475 4.9 44.5 1.0 H C:SER483 4.9 44.4 1.0 CG C:GLN474 4.9 44.9 1.0 CA C:ILE482 5.0 45.1 1.0 CA C:SER483 5.0 44.4 1.0

M.J.Conley, M.Mcelwee, L.Azmi, M.Gabrielsen, O.Byron, I.G.Goodfellow, D.Bhella. Calicivirus VP2 Forms A Portal-Like Assembly Following Receptor Engagement. Nature V. 565 377 2019.
ISSN: ESSN 1476-4687
PubMed: 30626974
DOI: 10.1038/S41586-018-0852-1