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Potassium in PDB 6fiz: Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+

Protein crystallography data

The structure of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+, PDB code: 6fiz was solved by L.M.R.Napolitano, M.De March, R.A.Steiner, S.Onesti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.62 / 2.63
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 181.220, 135.250, 67.430, 90.00, 91.95, 90.00
R / Rfree (%) 23.5 / 26.9

Potassium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ (pdb code 6fiz). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 12 binding sites of Potassium where determined in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+, PDB code: 6fiz:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 12 in 6fiz

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Potassium binding site 1 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K203

b:34.5
occ:1.00
 OG1 A:THR63 2.5 23.0 1.0
OG1 C:THR63 2.7 38.2 1.0
OG1 B:THR63 2.8 41.3 1.0
OG1 D:THR63 2.8 26.4 1.0
O C:THR63 2.8 40.0 1.0
O A:THR63 2.8 31.0 1.0
O B:THR63 2.8 39.8 1.0
O D:THR63 2.8 32.6 1.0
CB A:THR63 3.3 28.2 1.0
CB C:THR63 3.3 35.8 1.0
CB B:THR63 3.4 40.5 1.0
CB D:THR63 3.5 30.7 1.0
C A:THR63 3.7 29.0 1.0
C C:THR63 3.7 34.0 1.0
K A:K204 3.7 23.1 1.0
C B:THR63 3.8 37.0 1.0
C D:THR63 3.8 32.3 1.0
CA A:THR63 4.1 27.3 1.0
CA C:THR63 4.1 34.7 1.0
CA B:THR63 4.2 42.5 1.0
CA D:THR63 4.3 29.7 1.0
CG2 A:THR63 4.5 30.0 1.0
CG2 C:THR63 4.5 37.2 1.0
CG2 B:THR63 4.6 43.2 1.0
CG2 D:THR63 4.7 32.8 1.0
N A:VAL64 4.7 27.9 1.0
N C:VAL64 4.8 29.4 1.0
N D:VAL64 4.8 32.9 1.0
N B:VAL64 4.8 33.5 1.0
O A:THR62 4.9 33.0 1.0

Potassium binding site 2 out of 12 in 6fiz

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Potassium binding site 2 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K204

b:23.1
occ:1.00
 O C:HOH303 2.6 22.2 1.0
O C:VAL64 2.7 34.2 1.0
O B:VAL64 2.8 33.8 1.0
O A:VAL64 2.8 42.1 1.0
O D:VAL64 2.8 44.0 1.0
O A:THR63 2.8 31.0 1.0
O C:THR63 2.8 40.0 1.0
O D:THR63 2.9 32.6 1.0
O B:THR63 3.0 39.8 1.0
C C:VAL64 3.5 31.9 1.0
C A:VAL64 3.6 34.0 1.0
C D:VAL64 3.6 36.1 1.0
C B:VAL64 3.6 28.1 1.0
K A:K203 3.7 34.5 1.0
C A:THR63 4.0 29.0 1.0
C C:THR63 4.0 34.0 1.0
C D:THR63 4.1 32.3 1.0
C B:THR63 4.1 37.0 1.0
CA C:VAL64 4.3 31.0 1.0
CA A:VAL64 4.3 30.3 1.0
N C:GLY65 4.3 33.6 1.0
CA D:VAL64 4.3 33.6 1.0
CA B:VAL64 4.3 30.1 1.0
N A:GLY65 4.4 35.0 1.0
CA C:GLY65 4.4 32.9 1.0
N D:GLY65 4.4 38.1 1.0
N B:GLY65 4.4 28.5 1.0
CA B:GLY65 4.5 31.1 1.0
CA A:GLY65 4.5 43.5 1.0
CA D:GLY65 4.5 38.6 1.0
N C:VAL64 4.6 29.4 1.0
N A:VAL64 4.6 27.9 1.0
N D:VAL64 4.7 32.9 1.0
N B:VAL64 4.7 33.5 1.0
C C:GLY65 5.0 32.5 1.0

Potassium binding site 3 out of 12 in 6fiz

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Potassium binding site 3 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K205

b:21.5
occ:1.00
 O C:HOH303 2.5 22.2 1.0
O A:GLY65 2.7 35.3 1.0
O C:GLY65 2.7 31.9 1.0
O B:GLY65 2.8 32.6 1.0
O D:GLY65 2.9 40.2 1.0
C A:GLY65 3.8 43.5 1.0
C B:GLY65 3.9 29.2 1.0
C C:GLY65 3.9 32.5 1.0
C D:GLY65 4.0 38.7 1.0
O D:HOH304 4.0 34.8 1.0
O A:HOH305 4.4 27.9 1.0
N A:GLU66 4.7 39.7 1.0
CA A:GLY65 4.7 43.5 1.0
N B:GLU66 4.7 31.4 1.0
CA C:GLY65 4.7 32.9 1.0
CA B:GLY65 4.7 31.1 1.0
CA B:GLU66 4.7 32.6 1.0
N C:GLU66 4.7 31.2 1.0
CA A:GLU66 4.8 38.1 1.0
O A:VAL64 4.8 42.1 1.0
CA D:GLY65 4.9 38.6 1.0
CA C:GLU66 4.9 29.3 1.0
N D:GLU66 4.9 34.8 1.0
O B:VAL64 4.9 33.8 1.0
O C:VAL64 4.9 34.2 1.0
CA D:GLU66 4.9 31.6 1.0
O D:VAL64 5.0 44.0 1.0

Potassium binding site 4 out of 12 in 6fiz

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Potassium binding site 4 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K205

b:24.5
occ:1.00
 OG1 E:THR63 2.6 20.2 1.0
OG1 H:THR63 2.6 26.6 1.0
OG1 G:THR63 2.6 30.5 1.0
OG1 F:THR63 2.8 27.4 1.0
O E:THR63 2.9 31.3 1.0
O H:THR63 2.9 29.6 1.0
O G:THR63 2.9 41.6 1.0
O F:THR63 3.0 35.1 1.0
CB E:THR63 3.2 23.3 1.0
CB H:THR63 3.4 27.2 1.0
CB G:THR63 3.4 27.6 1.0
CB F:THR63 3.5 29.6 1.0
C H:THR63 3.7 26.2 1.0
C E:THR63 3.7 27.9 1.0
C G:THR63 3.8 30.8 1.0
K E:K206 3.8 22.6 1.0
C F:THR63 3.9 30.8 1.0
CA E:THR63 4.1 24.9 1.0
CA H:THR63 4.2 24.9 1.0
CA G:THR63 4.2 29.4 1.0
CA F:THR63 4.3 29.9 1.0
CG2 E:THR63 4.4 22.0 1.0
CG2 H:THR63 4.5 28.6 1.0
CG2 G:THR63 4.6 25.9 1.0
CG2 F:THR63 4.7 32.0 1.0
N H:VAL64 4.8 24.5 1.0
N G:VAL64 4.8 27.9 1.0
N E:VAL64 4.8 27.9 1.0
O H:THR62 4.9 25.8 1.0
O E:THR62 5.0 29.5 1.0
O G:THR62 5.0 27.1 1.0
N F:VAL64 5.0 30.6 1.0

Potassium binding site 5 out of 12 in 6fiz

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Potassium binding site 5 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K206

b:22.6
occ:1.00
 O G:VAL64 2.7 43.0 1.0
O F:VAL64 2.7 31.3 1.0
O E:VAL64 2.8 40.6 1.0
O H:VAL64 2.8 28.6 1.0
O G:THR63 2.8 41.6 1.0
O E:THR63 2.8 31.3 1.0
O G:HOH303 2.9 18.2 1.0
O F:THR63 2.9 35.1 1.0
O H:THR63 2.9 29.6 1.0
C G:VAL64 3.6 32.1 1.0
C E:VAL64 3.6 30.1 1.0
C F:VAL64 3.6 29.3 1.0
C H:VAL64 3.7 28.0 1.0
K E:K205 3.8 24.5 1.0
C G:THR63 4.0 30.8 1.0
C E:THR63 4.0 27.9 1.0
C F:THR63 4.0 30.8 1.0
C H:THR63 4.1 26.2 1.0
CA G:VAL64 4.3 29.6 1.0
CA E:VAL64 4.3 30.1 1.0
CA F:VAL64 4.3 28.7 1.0
N G:GLY65 4.3 30.9 1.0
CA H:VAL64 4.3 23.1 1.0
N F:GLY65 4.4 27.8 1.0
N E:GLY65 4.4 34.1 1.0
CA F:GLY65 4.4 30.3 1.0
CA G:GLY65 4.4 30.3 1.0
CA E:GLY65 4.5 31.2 1.0
N H:GLY65 4.5 30.4 1.0
N G:VAL64 4.6 27.9 1.0
N E:VAL64 4.6 27.9 1.0
CA H:GLY65 4.6 31.7 1.0
N F:VAL64 4.6 30.6 1.0
N H:VAL64 4.7 24.5 1.0

Potassium binding site 6 out of 12 in 6fiz

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Potassium binding site 6 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:K207

b:20.4
occ:1.00
 O G:HOH303 2.4 18.2 1.0
O E:GLY65 2.7 27.0 1.0
O H:GLY65 2.9 33.8 1.0
O F:GLY65 2.9 38.5 1.0
O G:GLY65 2.9 27.5 1.0
O E:HOH303 3.7 37.9 1.0
C E:GLY65 3.8 31.4 1.0
C H:GLY65 4.0 31.4 1.0
C G:GLY65 4.0 27.6 1.0
C F:GLY65 4.0 31.7 1.0
N E:GLU66 4.7 32.7 1.0
CA E:GLY65 4.7 31.2 1.0
CA E:GLU66 4.8 33.2 1.0
N H:GLU66 4.8 32.1 1.0
CA H:GLU66 4.8 31.1 1.0
N G:GLU66 4.9 28.2 1.0
CA H:GLY65 4.9 31.7 1.0
N F:GLU66 4.9 29.1 1.0
CA F:GLY65 4.9 30.3 1.0
CA G:GLU66 4.9 27.0 1.0
CA G:GLY65 4.9 30.3 1.0
CA F:GLU66 4.9 29.3 1.0
O H:VAL64 5.0 28.6 1.0
O E:VAL64 5.0 40.6 1.0
N E:ALA67 5.0 30.3 1.0

Potassium binding site 7 out of 12 in 6fiz

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Potassium binding site 7 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K204

b:30.9
occ:1.00
 O L:THR63 2.7 32.4 1.0
O I:THR63 2.7 25.4 1.0
OG1 K:THR63 2.7 24.8 1.0
O K:THR63 2.7 31.9 1.0
O J:THR63 2.8 50.2 1.0
OG1 L:THR63 2.8 27.7 1.0
OG1 I:THR63 2.8 23.6 1.0
OG1 J:THR63 2.9 37.5 1.0
CB K:THR63 3.4 29.2 1.0
CB L:THR63 3.4 30.1 1.0
CB I:THR63 3.4 22.4 1.0
K I:K205 3.5 27.9 1.0
CB J:THR63 3.5 38.8 1.0
O I:HOH304 3.5 38.6 1.0
C L:THR63 3.7 30.3 1.0
C I:THR63 3.7 23.3 1.0
C K:THR63 3.7 31.6 1.0
C J:THR63 3.7 43.2 1.0
CA L:THR63 4.2 29.1 1.0
CA K:THR63 4.2 28.8 1.0
CA I:THR63 4.2 24.2 1.0
CA J:THR63 4.2 39.0 1.0
CG2 K:THR63 4.6 31.9 1.0
CG2 L:THR63 4.7 26.9 1.0
CG2 I:THR63 4.7 23.4 1.0
N L:VAL64 4.7 28.5 1.0
N I:VAL64 4.7 21.6 1.0
N K:VAL64 4.7 28.4 1.0
CG2 J:THR63 4.7 41.5 1.0
N J:VAL64 4.8 37.0 1.0

Potassium binding site 8 out of 12 in 6fiz

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Potassium binding site 8 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K205

b:27.9
occ:1.00
 O I:VAL64 2.7 39.1 1.0
O L:VAL64 2.7 42.1 1.0
O J:VAL64 2.7 47.0 1.0
O K:THR63 2.7 31.9 1.0
O K:VAL64 2.8 37.1 1.0
O I:THR63 2.8 25.4 1.0
O L:THR63 2.8 32.4 1.0
O K:HOH304 2.8 13.5 1.0
O J:THR63 2.9 50.2 1.0
K I:K204 3.5 30.9 1.0
C I:VAL64 3.5 31.1 1.0
C L:VAL64 3.6 32.6 1.0
C K:VAL64 3.6 33.3 1.0
C J:VAL64 3.6 40.2 1.0
C K:THR63 3.9 31.6 1.0
C I:THR63 4.0 23.3 1.0
C L:THR63 4.0 30.3 1.0
C J:THR63 4.0 43.2 1.0
CA I:VAL64 4.2 25.1 1.0
CA K:VAL64 4.2 27.7 1.0
CA L:VAL64 4.3 27.4 1.0
CA J:VAL64 4.3 37.7 1.0
N L:GLY65 4.4 33.5 1.0
N I:GLY65 4.4 33.7 1.0
N K:GLY65 4.4 34.8 1.0
N J:GLY65 4.4 41.4 1.0
CA L:GLY65 4.5 33.7 1.0
CA J:GLY65 4.5 41.1 1.0
CA I:GLY65 4.5 32.2 1.0
CA K:GLY65 4.5 37.3 1.0
N K:VAL64 4.5 28.4 1.0
N I:VAL64 4.5 21.6 1.0
N L:VAL64 4.6 28.5 1.0
N J:VAL64 4.6 37.0 1.0

Potassium binding site 9 out of 12 in 6fiz

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Potassium binding site 9 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
I:K206

b:24.3
occ:1.00
 O K:HOH304 2.6 13.5 1.0
O L:GLY65 2.7 37.2 1.0
O I:GLY65 2.7 45.2 1.0
O K:GLY65 2.8 42.4 1.0
O J:GLY65 2.8 50.8 1.0
C L:GLY65 3.9 36.0 1.0
C I:GLY65 3.9 34.7 1.0
C K:GLY65 3.9 41.0 1.0
C J:GLY65 3.9 42.0 1.0
N L:GLU66 4.7 34.2 1.0
CA L:GLU66 4.7 34.7 1.0
N I:GLU66 4.7 32.2 1.0
N K:GLU66 4.7 38.8 1.0
CA I:GLU66 4.7 32.6 1.0
N J:GLU66 4.8 39.8 1.0
CA L:GLY65 4.8 33.7 1.0
CA J:GLU66 4.8 40.6 1.0
CA K:GLU66 4.8 37.1 1.0
CA K:GLY65 4.8 37.3 1.0
CA I:GLY65 4.8 32.2 1.0
CA J:GLY65 4.8 41.1 1.0
N L:ALA67 4.9 33.9 1.0
O K:VAL64 5.0 37.1 1.0
O I:VAL64 5.0 39.1 1.0

Potassium binding site 10 out of 12 in 6fiz

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Potassium binding site 10 out of 12 in the Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
M:K207

b:21.6
occ:1.00
 O P:THR63 2.6 27.8 1.0
O O:THR63 2.7 26.6 1.0
O M:THR63 2.7 28.0 1.0
O N:THR63 2.7 38.0 1.0
OG1 P:THR63 2.7 22.1 1.0
OG1 O:THR63 2.7 22.8 1.0
OG1 M:THR63 2.8 25.2 1.0
OG1 N:THR63 2.9 28.1 1.0
K M:K208 3.2 21.3 1.0
CB P:THR63 3.4 25.1 1.0
CB O:THR63 3.4 27.6 1.0
CB M:THR63 3.4 24.7 1.0
CB N:THR63 3.5 31.1 1.0
C P:THR63 3.6 25.4 1.0
C O:THR63 3.6 26.2 1.0
C M:THR63 3.7 27.3 1.0
C N:THR63 3.7 34.2 1.0
CA P:THR63 4.1 25.2 1.0
CA O:THR63 4.1 26.2 1.0
CA M:THR63 4.2 26.6 1.0
CA N:THR63 4.3 31.5 1.0
CG2 P:THR63 4.6 23.7 1.0
N O:VAL64 4.6 24.3 1.0
N P:VAL64 4.6 26.5 1.0
CG2 M:THR63 4.6 28.6 1.0
CG2 O:THR63 4.6 32.8 1.0
N N:VAL64 4.7 32.0 1.0
N M:VAL64 4.8 23.5 1.0
CG2 N:THR63 4.8 29.8 1.0
CA O:VAL64 4.9 25.6 1.0
CA P:VAL64 5.0 25.3 1.0

Reference:

L.M.R.Napolitano, M.De March, S.Onesti, R.A.Steiner. Crystal Structure of Cng Mimicking Nak-Eapp Mutant (T67A) Cocrystallized with K+ To Be Published.
Page generated: Mon Aug 12 16:06:57 2024

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