Potassium in PDB 6dzd: Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih

Protein crystallography data

The structure of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih, PDB code: 6dzd was solved by L.R.Almeida, M.P.Grejo, E.J.Mulinari, J.C.Santos, S.Camargo, A.Bernardes, J.R.C.Muniz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.94 / 2.66
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.567, 69.464, 179.589, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 24.8

Other elements in 6dzd:

The structure of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih (pdb code 6dzd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih, PDB code: 6dzd:

Potassium binding site 1 out of 1 in 6dzd

Go back to Potassium Binding Sites List in 6dzd
Potassium binding site 1 out of 1 in the Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K302

b:46.1
occ:1.00
O A:PHE213 2.6 31.6 1.0
O B:ASP210 2.6 35.9 1.0
O B:HOH460 2.7 30.0 1.0
O A:ASP210 2.8 37.8 1.0
O B:PHE213 2.9 32.3 1.0
C B:ASP210 3.6 36.7 1.0
C A:ASP210 3.8 38.5 1.0
C A:PHE213 3.8 29.9 1.0
CB A:ASP210 3.9 41.0 1.0
CA B:LYS211 3.9 35.3 1.0
C B:PHE213 4.1 30.8 1.0
N B:LYS211 4.2 36.0 1.0
CA A:LEU214 4.2 29.0 1.0
C B:LYS211 4.3 33.0 1.0
CA A:ASP210 4.3 39.5 1.0
N A:LEU214 4.5 28.5 1.0
CB B:ASP210 4.5 38.5 1.0
O B:LYS211 4.5 33.0 1.0
CG A:ASP210 4.6 43.8 1.0
CD1 A:PHE213 4.6 32.3 1.0
CA B:ASP210 4.7 36.6 1.0
N B:PHE213 4.7 30.1 1.0
CB A:LEU214 4.7 28.4 1.0
CG B:ASP210 4.7 40.8 1.0
N A:LYS211 4.8 36.4 1.0
OD1 B:ASP210 4.9 40.9 1.0
CE1 A:PHE213 4.9 34.1 1.0
N A:PHE213 4.9 29.5 1.0
N B:ALA212 4.9 31.8 1.0
CA A:PHE213 4.9 28.8 1.0
N B:LEU214 5.0 30.2 1.0
CA B:LEU214 5.0 31.2 1.0
OD2 A:ASP210 5.0 46.4 1.0

Reference:

L.R.Almeida, M.P.Grejo, E.J.Mulinari, J.C.Santos, S.Camargo, A.Bernardes, J.R.C.Muniz. Crystal Structure of Bacillus Licheniformis Hypothetical Protein Yfih To Be Published.
Page generated: Mon Dec 14 00:35:19 2020

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