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Potassium in PDB 6dor: Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
Enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
All present enzymatic activity of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1):
3.1.26.4;
3.1.26.4;
Protein crystallography data
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1), PDB code: 6dor
was solved by
N.L.Samara,
W.Yang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 19.94 / 1.50 |
| Space group | C 1 2 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 81.544, 37.711, 62.779, 90.00, 96.56, 90.00 |
| R / Rfree (%) | 15.5 / 19.4 |
Other elements in 6dor:
The structure of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1) also contains other interesting chemical elements:
| Magnesium | (Mg) | 2 atoms |
| Iodine | (I) | 4 atoms |
Potassium Binding Sites:
The binding sites of Potassium atom in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
(pdb code 6dor). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 3 binding sites of Potassium where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1), PDB code: 6dor:
Jump to Potassium binding site number: 1; 2; 3;
In total 3 binding sites of Potassium where determined in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1), PDB code: 6dor:
Jump to Potassium binding site number: 1; 2; 3;
Potassium binding site 1 out of 3 in 6dor
Go back to
Potassium Binding Sites List in 6dor
Potassium binding site 1 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1) within 5.0Å range:
|
Potassium binding site 2 out of 3 in 6dor
Go back to
Potassium Binding Sites List in 6dor
Potassium binding site 2 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1) within 5.0Å range:
|
Potassium binding site 3 out of 3 in 6dor
Go back to
Potassium Binding Sites List in 6dor
Potassium binding site 3 out
of 3 in the Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with An Rna/Dna Hybrid: Reaction in 2 Mm MG2+ and 300 Mm K+ For 120 S at 21 C (Dataset 1) within 5.0Å range:
|
Reference:
N.L.Samara,
W.Yang.
Cation Trafficking Propels Rna Hydrolysis. Nat. Struct. Mol. Biol. V. 25 715 2018.
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
Page generated: Mon Aug 12 15:50:01 2024
ISSN: ESSN 1545-9985
PubMed: 30076410
DOI: 10.1038/S41594-018-0099-4
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