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Potassium in PDB 6dn2: Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna

Protein crystallography data

The structure of Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna, PDB code: 6dn2 was solved by Q.Vicens, E.Mondragon, F.E.Reyes, J.Berman, H.Kaur, K.Kells, P.Wickens, J.Wilson, R.Gadwood, H.Schostarez, R.K.Suto, P.Coish, K.F.Blount, R.T.Batey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.55 / 2.88
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 71.070, 71.070, 140.480, 90.00, 90.00, 120.00
R / Rfree (%) 19.9 / 25.7

Other elements in 6dn2:

The structure of Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna (pdb code 6dn2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna, PDB code: 6dn2:

Potassium binding site 1 out of 1 in 6dn2

Go back to Potassium Binding Sites List in 6dn2
Potassium binding site 1 out of 1 in the Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Fmn Riboswitch Bound to BRX1354 Split Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:K204

b:76.5
occ:1.00
O6 Y:G97 3.0 59.0 1.0
O2 Y:GZG203 3.4 47.1 1.0
O4 Y:U96 4.0 58.8 1.0
C6 Y:G97 4.0 61.2 1.0
N6 Y:A85 4.1 37.7 1.0
N7 Y:G97 4.5 61.8 1.0
C10 Y:GZG203 4.6 43.4 1.0
C5 Y:G97 4.6 62.4 1.0
O6 Y:G98 4.7 61.0 1.0
C4 Y:U96 4.7 60.5 1.0

Reference:

Q.Vicens, E.Mondragon, F.E.Reyes, P.Coish, P.Aristoff, J.Berman, H.Kaur, K.W.Kells, P.Wickens, J.Wilson, R.C.Gadwood, H.J.Schostarez, R.K.Suto, K.F.Blount, R.T.Batey. Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch. Acs Chem. Biol. V. 13 2908 2018.
ISSN: ESSN 1554-8937
PubMed: 30107111
DOI: 10.1021/ACSCHEMBIO.8B00533
Page generated: Mon Dec 14 00:30:30 2020

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