Atomistry » Potassium » PDB 5zod-6b7f » 5zof
Atomistry »
  Potassium »
    PDB 5zod-6b7f »
      5zof »

Potassium in PDB 5zof: Crystal Structure of D181A/R192F HFEN1 in Complex with Dna

Protein crystallography data

The structure of Crystal Structure of D181A/R192F HFEN1 in Complex with Dna, PDB code: 5zof was solved by W.Han, Y.Hua, Y.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.82 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 47.670, 92.730, 102.780, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 26.9

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of D181A/R192F HFEN1 in Complex with Dna (pdb code 5zof). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of D181A/R192F HFEN1 in Complex with Dna, PDB code: 5zof:

Potassium binding site 1 out of 1 in 5zof

Go back to Potassium Binding Sites List in 5zof
Potassium binding site 1 out of 1 in the Crystal Structure of D181A/R192F HFEN1 in Complex with Dna


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of D181A/R192F HFEN1 in Complex with Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K401

b:0.8
occ:1.00
O A:ILE241 3.0 65.8 1.0
O A:ILE238 3.0 68.5 1.0
OG A:SER237 3.1 63.7 1.0
OP2 B:DC4 3.3 68.0 1.0
CB A:SER237 3.8 60.0 1.0
C A:ILE238 3.9 64.5 1.0
P B:DC4 3.9 68.2 1.0
OP1 B:DC4 3.9 72.5 1.0
C A:ILE241 3.9 65.8 1.0
O3' B:DT3 4.3 74.0 1.0
N A:ILE241 4.4 63.3 1.0
CA A:ARG239 4.4 65.4 1.0
C A:SER237 4.4 72.7 1.0
N A:ARG239 4.5 62.9 1.0
N A:ILE238 4.5 69.5 1.0
O A:LEU229 4.6 52.1 1.0
O A:SER237 4.6 70.2 1.0
N A:GLY240 4.6 63.8 1.0
CA A:ILE241 4.7 63.3 1.0
CA A:SER237 4.8 69.7 1.0
N A:GLY242 4.8 61.2 1.0
CA A:ILE238 4.8 64.4 1.0
C A:ARG239 5.0 71.1 1.0
CA A:GLY242 5.0 54.7 1.0

Reference:

H.Xu, R.Shi, W.Han, J.Cheng, X.Xu, K.Cheng, L.Wang, B.Tian, L.Zheng, B.Shen, Y.Hua, Y.Zhao. Structural Basis of 5' Flap Recognition and Protein-Protein Interactions of Human Flap Endonuclease 1. Nucleic Acids Res. V. 46 11315 2018.
ISSN: ESSN 1362-4962
PubMed: 30295841
DOI: 10.1093/NAR/GKY911
Page generated: Mon Aug 12 15:17:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy