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Potassium in PDB 5yrt: Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Enzymatic activity of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
All present enzymatic activity of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal:
4.2.1.28;
4.2.1.28;
Protein crystallography data
The structure of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal, PDB code: 5yrt
was solved by
N.Shibata,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.00 / 1.70 |
| Space group | P 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 72.687, 95.459, 114.567, 80.78, 87.58, 81.10 |
| R / Rfree (%) | 15 / 18.7 |
Other elements in 5yrt:
The structure of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal also contains other interesting chemical elements:
| Cobalt | (Co) | 4 atoms |
| Calcium | (Ca) | 4 atoms |
| Chlorine | (Cl) | 12 atoms |
Potassium Binding Sites:
The binding sites of Potassium atom in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
(pdb code 5yrt). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 8 binding sites of Potassium where determined in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal, PDB code: 5yrt:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Potassium where determined in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal, PDB code: 5yrt:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Potassium binding site 1 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 1 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 1 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 2 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 2 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 2 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 3 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 3 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 3 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 4 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 4 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 4 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 5 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 5 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 5 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 6 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 6 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 6 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 7 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 7 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 7 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Potassium binding site 8 out of 8 in 5yrt
Go back to
Potassium Binding Sites List in 5yrt
Potassium binding site 8 out
of 8 in the Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Potassium with other atoms in the K binding
site number 8 of Diol Dehydratase, Adocbl/Substrate-Free, Anaerobically-Prepared Crystal within 5.0Å range:
|
Reference:
N.Shibata,
Y.Sueyoshi,
Y.Higuchi,
T.Toraya.
Direct Participation of A Peripheral Side Chain of A Corrin Ring in Coenzyme B12CATALYSIS. Angew. Chem. Int. Ed. Engl. V. 57 7830 2018.
ISSN: ESSN 1521-3773
PubMed: 29797764
DOI: 10.1002/ANIE.201803591
Page generated: Mon Aug 12 15:14:50 2024
ISSN: ESSN 1521-3773
PubMed: 29797764
DOI: 10.1002/ANIE.201803591
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