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Potassium in PDB 5wjn: Crystal Structure of Hla-A*11:01-GTS3

Protein crystallography data

The structure of Crystal Structure of Hla-A*11:01-GTS3, PDB code: 5wjn was solved by S.Gras, J.Rossjohn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.67 / 2.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 158.325, 145.522, 106.303, 90.00, 121.14, 90.00
R / Rfree (%) 20.1 / 23

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Hla-A*11:01-GTS3 (pdb code 5wjn). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Hla-A*11:01-GTS3, PDB code: 5wjn:

Potassium binding site 1 out of 1 in 5wjn

Go back to Potassium Binding Sites List in 5wjn
Potassium binding site 1 out of 1 in the Crystal Structure of Hla-A*11:01-GTS3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Hla-A*11:01-GTS3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K101

b:89.2
occ:1.00
O B:LEU87 2.3 48.7 1.0
OD1 B:ASN83 2.7 47.3 1.0
O B:HIS84 2.9 42.6 1.0
C B:LEU87 3.5 49.0 1.0
CG B:ASN83 3.6 53.9 1.0
ND2 B:ASN83 3.8 43.3 1.0
C B:HIS84 3.8 42.8 1.0
O B:SER88 4.2 47.2 1.0
C B:SER88 4.2 47.4 1.0
N B:SER88 4.4 46.3 1.0
CA B:LEU87 4.5 43.1 1.0
N B:HIS84 4.5 40.0 1.0
CA B:VAL85 4.5 39.1 1.0
CA B:SER88 4.5 46.0 1.0
N B:VAL85 4.5 39.2 1.0
N B:GLN89 4.5 41.5 1.0
O H:HOH108 4.6 46.4 1.0
CB B:LEU87 4.6 42.6 1.0
N B:LEU87 4.6 43.5 1.0
C B:VAL85 4.8 43.5 1.0
O B:VAL85 4.8 43.3 1.0
CA B:HIS84 4.8 39.4 1.0
CB B:ASN83 5.0 38.7 1.0
CA B:GLN89 5.0 40.4 1.0

Reference:

A.Culshaw, K.Ladell, S.Gras, J.E.Mclaren, K.L.Miners, C.Farenc, H.Van Den Heuvel, E.Gostick, W.Dejnirattisai, A.Wangteeraprasert, T.Duangchinda, P.Chotiyarnwong, W.Limpitikul, S.Vasanawathana, P.Malasit, T.Dong, J.Rossjohn, J.Mongkolsapaya, D.A.Price, G.R.Screaton. Germline Bias Dictates Cross-Serotype Reactivity in A Common Dengue-Virus-Specific CD8(+) T Cell Response. Nat. Immunol. V. 18 1228 2017.
ISSN: ESSN 1529-2916
PubMed: 28945243
DOI: 10.1038/NI.3850
Page generated: Mon Aug 12 14:58:15 2024

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