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Potassium in PDB 5wjm: Crystal Structure of Mouse Cadherin-23 EC17-18

Protein crystallography data

The structure of Crystal Structure of Mouse Cadherin-23 EC17-18, PDB code: 5wjm was solved by P.De-La-Torre, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 86.60 / 2.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 122.476, 122.476, 43.603, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 26.6

Other elements in 5wjm:

The structure of Crystal Structure of Mouse Cadherin-23 EC17-18 also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Mouse Cadherin-23 EC17-18 (pdb code 5wjm). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Mouse Cadherin-23 EC17-18, PDB code: 5wjm:

Potassium binding site 1 out of 1 in 5wjm

Go back to Potassium Binding Sites List in 5wjm
Potassium binding site 1 out of 1 in the Crystal Structure of Mouse Cadherin-23 EC17-18


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Mouse Cadherin-23 EC17-18 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K2007

b:19.7
occ:1.00
OD2 A:ASP1918 2.7 24.4 1.0
OD1 A:ASP1918 2.7 25.5 1.0
CG A:ASP1918 3.1 25.2 1.0
O A:HOH2105 4.2 7.7 1.0
OD2 A:ASP1920 4.5 29.6 1.0
O A:PHE1919 4.6 27.0 1.0
CB A:ASP1918 4.7 24.9 1.0

Reference:

A.Jaiganesh, P.De-La-Torre, A.A.Patel, D.J.Termine, F.Velez-Cortes, C.Chen, M.Sotomayor. Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure V. 26 1210 2018.
ISSN: ISSN 1878-4186
PubMed: 30033219
DOI: 10.1016/J.STR.2018.06.003
Page generated: Mon Dec 14 00:11:35 2020

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