Potassium in PDB 5w77: Complex of Dna and Compounds

Other elements in 5w77:

The structure of Complex of Dna and Compounds also contains other interesting chemical elements:

Fluorine (F) 90 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Complex of Dna and Compounds (pdb code 5w77). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Complex of Dna and Compounds, PDB code: 5w77:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5w77

Go back to Potassium Binding Sites List in 5w77
Potassium binding site 1 out of 2 in the Complex of Dna and Compounds


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Complex of Dna and Compounds within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:0.0
occ:1.00
O6 A:DG7 2.8 0.0 1.0
O6 A:DG17 2.9 0.0 1.0
O6 A:DG12 2.9 0.0 1.0
O6 A:DG20 2.9 0.0 1.0
O6 A:DG8 2.9 0.0 1.0
O6 A:DG16 2.9 0.0 1.0
O6 A:DG11 3.0 0.0 1.0
O6 A:DG21 3.0 0.0 1.0
H1 A:DG7 3.5 0.0 1.0
K A:K102 3.5 0.0 1.0
H1 A:DG16 3.5 0.0 1.0
H1 A:DG21 3.6 0.0 1.0
H1 A:DG8 3.6 0.0 1.0
H1 A:DG20 3.6 0.0 1.0
C6 A:DG7 3.7 0.0 1.0
H1 A:DG11 3.7 0.0 1.0
C6 A:DG8 3.8 0.0 1.0
C6 A:DG20 3.8 0.0 1.0
C6 A:DG12 3.8 0.0 1.0
H1 A:DG12 3.8 0.0 1.0
C6 A:DG21 3.8 0.0 1.0
C6 A:DG16 3.8 0.0 1.0
C6 A:DG17 3.9 0.0 1.0
C6 A:DG11 3.9 0.0 1.0
H1 A:DG17 3.9 0.0 1.0
N1 A:DG7 4.0 0.0 1.0
N1 A:DG16 4.1 0.0 1.0
N1 A:DG8 4.1 0.0 1.0
N1 A:DG21 4.1 0.0 1.0
N1 A:DG20 4.1 0.0 1.0
N1 A:DG12 4.2 0.0 1.0
N1 A:DG11 4.2 0.0 1.0
N1 A:DG17 4.3 0.0 1.0
C7 A:9WP103 4.9 0.0 1.0
C8 A:9WP103 4.9 0.0 1.0
C5 A:DG7 5.0 0.0 1.0
C6 A:9WP103 5.0 0.0 1.0

Potassium binding site 2 out of 2 in 5w77

Go back to Potassium Binding Sites List in 5w77
Potassium binding site 2 out of 2 in the Complex of Dna and Compounds


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Complex of Dna and Compounds within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:0.0
occ:1.00
O6 A:DG18 2.8 0.0 1.0
O6 A:DG8 2.9 0.0 1.0
O6 A:DG12 3.0 0.0 1.0
O6 A:DG22 3.0 0.0 1.0
O6 A:DG21 3.0 0.0 1.0
O6 A:DG17 3.0 0.0 1.0
O6 A:DG9 3.0 0.0 1.0
O6 A:DG13 3.1 0.0 1.0
H1 A:DG18 3.3 0.0 1.0
H1 A:DG9 3.5 0.0 1.0
K A:K101 3.5 0.0 1.0
H1 A:DG8 3.6 0.0 1.0
C6 A:DG18 3.6 0.0 1.0
H1 A:DG21 3.6 0.0 1.0
H1 A:DG13 3.8 0.0 1.0
C6 A:DG8 3.8 0.0 1.0
N1 A:DG18 3.8 0.0 1.0
H1 A:DG22 3.8 0.0 1.0
C6 A:DG21 3.9 0.0 1.0
C6 A:DG9 3.9 0.0 1.0
C6 A:DG12 3.9 0.0 1.0
H1 A:DG12 4.0 0.0 1.0
C6 A:DG22 4.0 0.0 1.0
C6 A:DG17 4.0 0.0 1.0
C6 A:DG13 4.0 0.0 1.0
N1 A:DG9 4.0 0.0 1.0
H1 A:DG17 4.1 0.0 1.0
H54 A:9WP104 4.1 0.0 1.0
N1 A:DG8 4.1 0.0 1.0
N1 A:DG21 4.1 0.0 1.0
N1 A:DG13 4.3 0.0 1.0
N1 A:DG22 4.3 0.0 1.0
N1 A:DG12 4.4 0.0 1.0
N1 A:DG17 4.5 0.0 1.0
C5 A:DG18 4.9 0.0 1.0
C5 A:DG8 5.0 0.0 1.0

Reference:

D.R.Calabrese, X.Chen, E.C.Leon, S.M.Gaikwad, Z.Phyo, W.M.Hewitt, S.Alden, T.A.Hilimire, F.He, A.M.Michalowski, J.K.Simmons, L.B.Saunders, S.Zhang, D.Connors, K.J.Walters, B.A.Mock, J.S.Schneekloth Jr.. Chemical and Structural Studies Provide A Mechanistic Basis For Recognition of the Myc G-Quadruplex. Nat Commun V. 9 4229 2018.
ISSN: ESSN 2041-1723
PubMed: 30315240
DOI: 10.1038/S41467-018-06315-W
Page generated: Mon Dec 14 00:11:00 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy