Atomistry » Potassium » PDB 5urs-5wgk » 5w6h
Atomistry »
  Potassium »
    PDB 5urs-5wgk »
      5w6h »

Potassium in PDB 5w6h: Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213)

Protein crystallography data

The structure of Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213), PDB code: 5w6h was solved by M.Plattner, M.M.Shneider, P.G.Leiman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.29 / 2.29
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 170.079, 170.079, 246.384, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 17

Other elements in 5w6h:

The structure of Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213) also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213) (pdb code 5w6h). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213), PDB code: 5w6h:

Potassium binding site 1 out of 1 in 5w6h

Go back to Potassium Binding Sites List in 5w6h
Potassium binding site 1 out of 1 in the Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213)


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Bacteriophage CBA120 Tailspike Protein 4 Enzymatically Active Domain (TSP4DN, ORF213) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1111

b:70.7
occ:1.00
O B:GLU347 3.6 48.0 1.0
CB C:GLU347 3.6 55.6 1.0
CB A:GLU347 3.7 66.7 1.0
CB B:GLU347 3.7 59.8 1.0
O C:GLU347 3.8 45.1 1.0
O A:GLU347 3.8 48.2 1.0
CA B:GLU347 3.9 51.1 1.0
CA C:GLU347 3.9 48.5 1.0
CA A:GLU347 4.0 57.4 1.0
CG C:GLU347 4.0 64.6 1.0
CG B:GLU347 4.0 66.7 1.0
CG A:GLU347 4.1 73.2 1.0
C B:GLU347 4.2 49.3 1.0
C C:GLU347 4.3 44.8 1.0
C A:GLU347 4.3 49.9 1.0
CG2 B:VAL351 4.4 37.3 1.0
CG2 C:VAL351 4.5 33.0 1.0
CG2 A:VAL351 4.5 41.5 1.0
CB B:ARG350 4.6 36.0 1.0
CB A:ARG350 4.8 42.5 1.0
CB C:ARG350 4.9 38.9 1.0

Reference:

M.Plattner, M.M.Shneider, N.P.Arbatsky, A.S.Shashkov, A.O.Chizhov, S.Nazarov, N.S.Prokhorov, N.M.I.Taylor, S.A.Buth, M.Gambino, Y.E.Gencay, L.Brondsted, E.M.Kutter, Y.A.Knirel, P.G.Leiman. Structure and Function of the Branched Receptor-Binding Complex of Bacteriophage CBA120. J.Mol.Biol. V. 431 3718 2019.
ISSN: ESSN 1089-8638
PubMed: 31325442
DOI: 10.1016/J.JMB.2019.07.022
Page generated: Mon Dec 14 00:10:51 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy