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Potassium in PDB 5w1d: Crystal Structure of Mouse Protocadherin-15 EC4-7

Protein crystallography data

The structure of Crystal Structure of Mouse Protocadherin-15 EC4-7, PDB code: 5w1d was solved by C.F.Klanseck, B.L.Neel, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 76.09 / 3.35
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.863, 78.863, 289.469, 90.00, 90.00, 90.00
R / Rfree (%) 22.7 / 27.9

Other elements in 5w1d:

The structure of Crystal Structure of Mouse Protocadherin-15 EC4-7 also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Mouse Protocadherin-15 EC4-7 (pdb code 5w1d). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Mouse Protocadherin-15 EC4-7, PDB code: 5w1d:

Potassium binding site 1 out of 1 in 5w1d

Go back to Potassium Binding Sites List in 5w1d
Potassium binding site 1 out of 1 in the Crystal Structure of Mouse Protocadherin-15 EC4-7


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Mouse Protocadherin-15 EC4-7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1006

b:0.5
occ:1.00
OE2 A:GLU517 2.9 0.7 1.0
OE1 A:GLU517 3.1 0.3 1.0
OD1 A:ASP516 3.3 0.2 1.0
CD A:GLU517 3.4 0.0 1.0
OD2 A:ASP483 3.6 1.0 1.0
OD2 A:ASP480 4.2 0.8 1.0
CG A:ASP516 4.3 0.9 1.0
CG A:ASP483 4.4 0.5 1.0
CB A:ASP483 4.5 0.9 1.0
N A:GLU517 4.8 0.6 1.0
CA A:ASP516 4.8 0.8 1.0
CG A:GLU517 4.8 0.6 1.0
OD2 A:ASP516 5.0 0.7 1.0
CA A:CA1007 5.0 0.1 1.0

Reference:

C.Klanseck, B.L.Neel, M.Sotomayor. Crystal Structure of Mouse Protocadherin-15 EC4-7 To Be Published.
Page generated: Mon Aug 12 14:52:23 2024

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