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Potassium in PDB 5vsn: Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L

Protein crystallography data

The structure of Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L, PDB code: 5vsn was solved by Z.Yuchi, F.Van Petegem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.61 / 1.44
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.290, 66.230, 66.980, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 19.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L (pdb code 5vsn). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L, PDB code: 5vsn:

Potassium binding site 1 out of 1 in 5vsn

Go back to Potassium Binding Sites List in 5vsn
Potassium binding site 1 out of 1 in the Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Mouse Ryanodine Receptor 2 SPRY2 Domain (1080- 1253) Disease Mutant P1124L within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1302

b:25.1
occ:0.50
O A:THR1243 2.7 22.7 1.0
O A:HOH1459 2.7 33.0 1.0
OH A:TYR1094 2.9 23.2 1.0
CZ A:TYR1094 3.7 21.6 1.0
CE2 A:TYR1094 3.8 22.6 1.0
C A:THR1243 3.9 20.4 1.0
O A:ARG1245 4.5 23.6 1.0
CB A:THR1243 4.6 22.4 1.0
CB A:ASP1246 4.6 27.5 1.0
O A:ASN1244 4.7 26.1 1.0
CA A:THR1243 4.7 23.7 1.0
C A:ASN1244 4.8 22.1 1.0
CE1 A:TYR1094 4.8 22.2 1.0
CA A:ASN1244 4.9 22.7 1.0
N A:ASN1244 4.9 21.6 1.0
OG1 A:THR1243 5.0 24.4 1.0

Reference:

F.J.Alvarado, J.M.Bos, Z.Yuchi, C.R.Valdivia, J.J.Hernandez, Y.T.Zhao, D.S.Henderlong, Y.Chen, T.R.Booher, C.A.Marcou, F.Van Petegem, M.J.Ackerman, H.H.Valdivia. Cardiac Hypertrophy and Arrhythmia in Mice Induced By A Mutation in Ryanodine Receptor 2. Jci Insight V. 5 2019.
ISSN: ISSN 2379-3708
PubMed: 30835254
DOI: 10.1172/JCI.INSIGHT.126544
Page generated: Mon Dec 14 00:10:28 2020

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