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Potassium in PDB 5uzs: Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200

Enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200

All present enzymatic activity of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200, PDB code: 5uzs was solved by N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.09 / 2.37
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 111.124, 144.396, 87.527, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 23.8

Other elements in 5uzs:

The structure of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 4 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200 (pdb code 5uzs). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200, PDB code: 5uzs:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5uzs

Go back to Potassium Binding Sites List in 5uzs
Potassium binding site 1 out of 2 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K506

b:59.6
occ:1.00
O D:CYS303 2.8 28.7 1.0
O B:GLU465 2.9 27.6 1.0
O D:GLY300 2.9 31.5 1.0
O D:GLY298 3.0 32.6 1.0
O D:HOH637 3.1 25.3 1.0
O B:SER466 3.3 60.3 1.0
C B:SER466 3.5 52.0 1.0
O B:HIS467 3.6 40.3 1.0
C D:CYS303 3.7 24.4 1.0
C B:HIS467 3.7 40.3 1.0
CB D:CYS303 3.9 40.3 1.0
N B:HIS467 3.9 48.1 1.0
CA B:SER466 4.0 42.7 1.0
C B:GLU465 4.0 28.1 1.0
C D:GLY298 4.0 27.1 1.0
C D:GLY300 4.1 29.3 1.0
CA D:CYS303 4.1 31.8 1.0
N B:PRO468 4.1 35.4 1.0
CA B:HIS467 4.2 36.4 1.0
N D:CYS303 4.2 24.8 1.0
N D:GLY300 4.2 20.5 1.0
C D:PRO299 4.3 24.6 1.0
SG D:CYS303 4.3 40.7 1.0
N B:SER466 4.5 29.9 1.0
CD2 B:HIS469 4.5 30.0 1.0
CA B:PRO468 4.5 32.3 1.0
CA D:PRO299 4.5 29.1 1.0
O D:PRO299 4.6 24.4 1.0
NE2 B:HIS469 4.7 28.8 1.0
CD B:PRO468 4.7 28.0 1.0
N D:THR304 4.7 25.6 1.0
CA D:GLY300 4.7 23.2 1.0
N D:PRO299 4.8 33.0 1.0
CA D:GLY298 4.9 23.8 1.0

Potassium binding site 2 out of 2 in 5uzs

Go back to Potassium Binding Sites List in 5uzs
Potassium binding site 2 out of 2 in the Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K506

b:48.6
occ:1.00
O D:GLU465 2.8 24.6 1.0
O D:SER466 2.9 52.6 1.0
O C:CYS303 2.9 34.4 1.0
O C:GLY298 2.9 36.2 1.0
O C:GLY300 3.0 28.6 1.0
O C:HOH633 3.2 32.4 1.0
C D:SER466 3.3 46.1 1.0
O D:HIS467 3.7 36.9 1.0
CB C:CYS303 3.7 31.7 1.0
C C:CYS303 3.7 29.6 1.0
C D:HIS467 3.7 46.7 1.0
CA D:SER466 3.8 38.6 1.0
C D:GLU465 3.9 24.2 1.0
N D:HIS467 3.9 37.4 1.0
C C:GLY298 4.0 35.6 1.0
N D:PRO468 4.1 47.4 1.0
CA C:CYS303 4.1 33.0 1.0
C C:GLY300 4.1 27.9 1.0
C C:PRO299 4.1 33.3 1.0
N C:CYS303 4.2 31.5 1.0
CA D:HIS467 4.2 39.9 1.0
CD2 D:HIS469 4.2 26.7 1.0
N C:GLY300 4.2 24.4 1.0
N D:SER466 4.3 23.9 1.0
O C:PRO299 4.3 23.8 1.0
NE2 D:HIS469 4.3 29.3 1.0
CA C:PRO299 4.4 25.6 1.0
CA D:PRO468 4.5 41.2 1.0
SG C:CYS303 4.6 32.0 1.0
CD D:PRO468 4.7 41.8 1.0
N C:PRO299 4.7 27.6 1.0
CA C:GLY300 4.8 24.4 1.0
N C:THR304 4.8 26.8 1.0
CA C:GLY298 5.0 30.8 1.0

Reference:

N.Maltseva, Y.Kim, R.Mulligan, M.Makowska-Grzyska, M.Gu, D.R.Gollapalli, L.Hedstrom, A.Joachimiak, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Inosine 5'-Monophosphate Dehydrogenase From Clostridium Perfringens Complexed with Imp and P200 To Be Published.
Page generated: Mon Aug 12 14:48:23 2024

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