Atomistry » Potassium » PDB 5mro-5t5i » 5nl9
Atomistry »
  Potassium »
    PDB 5mro-5t5i »
      5nl9 »

Potassium in PDB 5nl9: Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans

Protein crystallography data

The structure of Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans, PDB code: 5nl9 was solved by F.A.Saul, A.Haouz, M.Picardeau, N.Benaroudj, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.84 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.683, 56.100, 68.794, 90.00, 105.82, 90.00
R / Rfree (%) 20.3 / 23.4

Other elements in 5nl9:

The structure of Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans (pdb code 5nl9). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans, PDB code: 5nl9:

Potassium binding site 1 out of 1 in 5nl9

Go back to Potassium Binding Sites List in 5nl9
Potassium binding site 1 out of 1 in the Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of A Peroxide Stress Regulator From Leptospira Interrogans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K202

b:41.1
occ:0.80
O B:ASN132 2.6 23.4 1.0
OD1 B:ASN72 2.8 33.7 1.0
O A:HOH311 3.1 45.4 1.0
O B:HOH365 3.2 40.8 1.0
OE1 A:GLU96 3.3 39.5 1.0
OD1 B:ASN132 3.5 22.9 1.0
OE2 A:GLU96 3.6 53.0 1.0
O A:LYS140 3.6 20.8 1.0
C B:ASN132 3.7 25.2 1.0
CG B:ASN72 3.8 34.6 1.0
CB B:ASN134 3.8 26.5 1.0
CD A:GLU96 3.9 62.5 1.0
NZ A:LYS142 3.9 25.7 1.0
CG B:ASN132 3.9 28.6 1.0
N B:ASN134 4.0 23.8 1.0
ND2 B:ASN132 4.2 20.1 1.0
C B:CYS133 4.2 28.1 1.0
CB B:ASN72 4.4 23.4 1.0
CA B:CYS133 4.4 24.1 1.0
C A:LYS140 4.5 24.3 1.0
O B:HOH389 4.5 25.9 1.0
CA B:ASN72 4.5 19.3 1.0
N B:CYS133 4.6 23.2 1.0
CA B:ASN134 4.6 23.7 1.0
CB B:ASN132 4.7 15.8 1.0
ND2 B:ASN72 4.7 33.1 1.0
O B:CYS133 4.7 27.9 1.0
CA A:GLY141 4.8 23.1 1.0
CA B:ASN132 4.8 19.5 1.0
N A:GLY141 4.9 22.7 1.0
CG B:ASN134 5.0 52.5 1.0

Reference:

M.Kebouchi, F.Saul, R.Taher, A.Landier, B.Beaudeau, S.Dubrac, P.Weber, A.Haouz, M.Picardeau, N.Benaroudj. Structure and Function of the Leptospira Interrogans Peroxide Stress Regulator (Perr), An Atypical Perr Devoid of A Structural Metal-Binding Site. J. Biol. Chem. V. 293 497 2018.
ISSN: ESSN 1083-351X
PubMed: 29146596
DOI: 10.1074/JBC.M117.804443
Page generated: Mon Dec 14 00:06:33 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy