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Potassium in PDB 5mvb: Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand.

Other elements in 5mvb:

The structure of Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand. also contains other interesting chemical elements:

Gold (Au) 20 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand. (pdb code 5mvb). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand., PDB code: 5mvb:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5mvb

Go back to Potassium Binding Sites List in 5mvb
Potassium binding site 1 out of 2 in the Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:1.0
occ:1.00
O6 A:DG22 2.4 1.0 1.0
O6 A:DG4 2.4 1.0 1.0
O6 A:DG16 2.5 1.0 1.0
O6 A:DG17 2.5 1.0 1.0
O6 A:DG12 2.6 1.0 1.0
O6 A:DG11 2.9 1.0 1.0
H1 A:DG4 3.4 1.0 1.0
O6 A:DG23 3.5 1.0 1.0
C6 A:DG17 3.5 1.0 1.0
C6 A:DG22 3.5 1.0 1.0
O6 A:DG5 3.5 1.0 1.0
C6 A:DG4 3.5 1.0 1.0
H1 A:DG22 3.6 1.0 1.0
H1 A:DG12 3.6 1.0 1.0
C6 A:DG16 3.6 1.0 1.0
C6 A:DG12 3.7 1.0 1.0
H1 A:DG11 3.7 1.0 1.0
H1 A:DG17 3.7 1.0 1.0
H1 A:DG5 3.8 1.0 1.0
C6 A:DG11 3.8 1.0 1.0
H1 A:DG16 3.8 1.0 1.0
N1 A:DG4 3.9 1.0 1.0
N1 A:DG22 4.0 1.0 1.0
N1 A:DG17 4.0 1.0 1.0
N1 A:DG12 4.1 1.0 1.0
N1 A:DG11 4.1 1.0 1.0
H1 A:DG23 4.2 1.0 1.0
N1 A:DG16 4.2 1.0 1.0
C6 A:DG5 4.3 1.0 1.0
N1 A:DG5 4.4 1.0 1.0
C6 A:DG23 4.4 1.0 1.0
K A:K102 4.5 1.0 1.0
C5 A:DG17 4.6 1.0 1.0
H611 A:AUZ103 4.6 1.0 1.0
C5 A:DG22 4.7 1.0 1.0
N1 A:DG23 4.7 1.0 1.0
H631 A:AUZ103 4.8 1.0 1.0
C5 A:DG4 4.8 1.0 1.0
C5 A:DG16 4.8 1.0 1.0
C5 A:DG11 4.9 1.0 1.0
C5 A:DG12 5.0 1.0 1.0

Potassium binding site 2 out of 2 in 5mvb

Go back to Potassium Binding Sites List in 5mvb
Potassium binding site 2 out of 2 in the Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Solution Structure of A Human G-Quadruplex Hybrid-2 Form in Complex with A Gold-Ligand. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K102

b:1.0
occ:1.00
O6 A:DG10 2.3 1.0 1.0
O6 A:DG24 2.4 1.0 1.0
O6 A:DG18 2.7 1.0 1.0
O6 A:DG6 2.7 1.0 1.0
H1 A:DG10 3.3 1.0 1.0
C6 A:DG10 3.4 1.0 1.0
H1 A:DG24 3.4 1.0 1.0
O6 A:DG23 3.4 1.0 1.0
O6 A:DG5 3.4 1.0 1.0
O6 A:DG17 3.5 1.0 1.0
C6 A:DG24 3.5 1.0 1.0
O6 A:DG11 3.5 1.0 1.0
H1 A:DG18 3.6 1.0 1.0
C6 A:DG18 3.7 1.0 1.0
H1 A:DG6 3.8 1.0 1.0
N1 A:DG10 3.8 1.0 1.0
H1 A:DG17 3.8 1.0 1.0
C6 A:DG6 3.8 1.0 1.0
N1 A:DG24 3.9 1.0 1.0
H1 A:DG23 3.9 1.0 1.0
C6 A:DG23 4.1 1.0 1.0
C6 A:DG17 4.1 1.0 1.0
N1 A:DG18 4.1 1.0 1.0
H1 A:DG5 4.2 1.0 1.0
N1 A:DG17 4.2 1.0 1.0
N1 A:DG6 4.2 1.0 1.0
C6 A:DG5 4.2 1.0 1.0
N1 A:DG23 4.3 1.0 1.0
C6 A:DG11 4.4 1.0 1.0
K A:K101 4.5 1.0 1.0
N1 A:DG5 4.6 1.0 1.0
C5 A:DG10 4.6 1.0 1.0
H1 A:DG11 4.6 1.0 1.0
C5 A:DG24 4.8 1.0 1.0
N1 A:DG11 4.9 1.0 1.0

Reference:

J.Wirmer-Bartoschek, L.E.Bendel, H.R.A.Jonker, J.T.Grun, F.Papi, C.Bazzicalupi, L.Messori, P.Gratteri, H.Schwalbe. Solution uc(Nmr) Structure of A Ligand/Hybrid-2-G-Quadruplex Complex Reveals Rearrangements That Affect Ligand Binding. Angew. Chem. Int. Ed. Engl. V. 56 7102 2017.
ISSN: ESSN 1521-3773
PubMed: 28524432
DOI: 10.1002/ANIE.201702135
Page generated: Mon Dec 14 00:05:52 2020

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