Potassium in PDB 5ix7: Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array

The structure of Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array, PDB code: 5ix7 was solved by J.Kondo, Y.Tada, T.Dairaku, Y.Hattori, H.Saneyoshi, A.Ono, Y.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.11 / 1.40
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	30.150, 30.150, 118.420, 90.00, 90.00, 120.00
R / Rfree (%)	16.5 / 18.9

The structure of Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array also contains other interesting chemical elements:

Silver	(Ag)	6 atoms
Bromine	(Br)	1 atom

The binding sites of Potassium atom in the Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array (pdb code 5ix7). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array, PDB code: 5ix7:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array within 5.0Å range: probe atom residue distance (Å) B Occ A:K107 b:12.8 occ:1.00 O2 A:CBR6 2.6 13.8 1.0 O A:HOH245 2.7 22.9 1.0 H8 A:DG7 3.3 18.6 1.0 C8 A:DG7 3.6 15.5 1.0 C2 A:CBR6 3.8 15.1 1.0 H1' A:CBR6 3.9 27.0 1.0 AG A:AG102 4.0 11.4 1.0 N7 A:DG7 4.0 12.4 1.0 H1' A:DG7 4.3 23.1 1.0 N9 A:DG7 4.3 14.6 1.0 O A:HOH214 4.4 37.3 1.0 N3 A:CBR6 4.4 9.5 1.0 O A:HOH237 4.5 26.3 0.2 AG A:AG101 4.6 13.9 0.5 O A:HOH264 4.8 41.6 1.0 N1 A:CBR6 4.8 18.2 1.0 C1' A:DG7 4.8 19.2 1.0 C5 A:DG7 4.9 16.9 1.0 C1' A:CBR6 4.9 22.5 1.0

Potassium binding site 2 out of 2 in the Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Metallo-Dna Nanowire with Infinite One- Dimensional Silver Array within 5.0Å range: probe atom residue distance (Å) B Occ A:K108 b:32.6 occ:1.00 O A:HOH251 2.6 25.0 1.0 O2 A:DT5 2.8 15.3 1.0 O2 A:DC4 3.0 16.9 1.0 C2 A:DT5 3.6 13.8 1.0 O4' A:DT5 3.6 19.1 1.0 H1' A:DT5 3.7 22.3 1.0 AG A:AG104 3.8 14.7 1.0 C1' A:DT5 4.0 18.6 1.0 C2 A:DC4 4.0 14.7 1.0 N1 A:DT5 4.1 13.8 1.0 H22 A:DG2 4.3 17.0 1.0 N3 A:DT5 4.5 14.7 1.0 H2' A:DC4 4.5 21.6 1.0 N3 A:DC4 4.5 13.6 1.0 H4' A:DT5 4.8 25.8 1.0 H1' A:DC4 4.8 22.3 1.0 C4' A:DT5 4.8 21.5 1.0 N2 A:DG2 4.8 14.2 1.0 AG A:AG103 4.9 11.3 1.0

J.Kondo, Y.Tada, T.Dairaku, Y.Hattori, H.Saneyoshi, A.Ono, Y.Tanaka. A Metallo-Dna Nanowire with Uninterrupted One-Dimensional Silver Array Nat Chem V. 9 956 2017.
ISSN: ESSN 1755-4349
PubMed: 28937663
DOI: 10.1038/NCHEM.2808