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Potassium in PDB 5hw2: Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid

Enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid

All present enzymatic activity of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid:
4.3.2.2;

Protein crystallography data

The structure of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid, PDB code: 5hw2 was solved by C.Chang, N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.43 / 2.05
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 88.680, 88.680, 255.665, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 24.5

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid (pdb code 5hw2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid, PDB code: 5hw2:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 5hw2

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Potassium binding site 1 out of 4 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K501

b:23.9
occ:1.00
 OG A:SER181 2.8 21.7 1.0
O A:THR211 2.8 19.4 1.0
OE1 A:GLN179 2.9 37.6 1.0
O A:GLY182 2.9 23.6 1.0
OD1 A:ASP96 2.9 31.1 1.0
O A:GLN212 3.1 32.6 1.0
CD A:GLN179 3.4 35.1 1.0
C A:GLN212 3.6 29.3 1.0
N A:GLY182 3.8 26.8 1.0
NE2 A:GLN179 3.9 34.0 1.0
CA A:GLN212 3.9 23.3 1.0
C A:THR211 3.9 16.6 1.0
C A:GLY182 4.0 25.3 1.0
CG A:ASP96 4.0 32.0 1.0
CB A:SER181 4.1 22.4 1.0
OG A:SER210 4.2 15.0 1.0
N A:SER181 4.2 27.4 1.0
CG A:GLN179 4.2 33.8 1.0
C A:SER181 4.2 24.1 1.0
N A:GLY185 4.3 29.3 1.0
CB A:GLN179 4.3 31.5 1.0
CA A:SER181 4.4 24.2 1.0
CG2 A:THR93 4.4 28.6 1.0
OD2 A:ASP96 4.4 31.4 1.0
N A:GLN212 4.4 17.3 1.0
CA A:GLY182 4.5 25.0 1.0
CA A:GLY185 4.5 29.1 1.0
N A:VAL213 4.5 28.5 1.0
O A:ALA183 4.7 22.7 1.0
CB A:SER210 4.7 14.6 1.0
O A:VAL213 5.0 24.5 1.0

Potassium binding site 2 out of 4 in 5hw2

Go back to Potassium Binding Sites List in 5hw2
Potassium binding site 2 out of 4 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K501

b:36.2
occ:1.00
 O B:THR211 2.8 24.6 1.0
OD1 B:ASP96 2.8 30.4 1.0
O B:GLN212 2.9 28.7 1.0
O B:GLY182 2.9 39.8 1.0
OE1 B:GLN179 3.1 24.8 1.0
C B:GLN212 3.3 26.3 1.0
CA B:GLN212 3.5 26.7 1.0
CG2 B:THR93 3.5 36.6 1.0
CG B:ASP96 3.5 28.7 1.0
CD B:GLN179 3.6 25.1 1.0
NE2 B:GLN179 3.6 26.4 1.0
OD2 B:ASP96 3.7 25.0 1.0
C B:THR211 3.8 26.9 1.0
CB B:SER181 3.9 33.4 1.0
C B:GLY182 4.1 33.0 1.0
N B:GLN212 4.2 26.0 1.0
O B:ALA183 4.2 33.8 1.0
N B:GLY182 4.2 32.9 1.0
N B:GLY185 4.2 25.9 1.0
N B:SER181 4.3 29.4 1.0
C B:SER181 4.3 34.3 1.0
N B:VAL213 4.4 22.7 1.0
CA B:SER181 4.4 32.3 1.0
CA B:GLY185 4.6 27.4 1.0
CB B:THR93 4.6 39.2 1.0
C B:ALA183 4.6 32.0 1.0
CB B:GLN212 4.7 23.1 1.0
N B:ASP96 4.7 27.1 1.0
CB B:ASP96 4.7 29.2 1.0
CA B:GLY182 4.8 31.3 1.0
CG B:GLN212 4.8 22.3 1.0
CG B:GLN179 4.8 21.8 1.0
CA B:ASP96 4.8 25.8 1.0
O B:SER181 4.8 37.4 1.0
C B:VAL184 4.9 26.5 1.0

Potassium binding site 3 out of 4 in 5hw2

Go back to Potassium Binding Sites List in 5hw2
Potassium binding site 3 out of 4 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
C:K501

b:38.0
occ:1.00
 O C:GLN212 2.7 33.8 1.0
OG C:SER181 2.7 41.0 1.0
O C:GLY182 2.7 29.9 1.0
O C:THR211 2.8 31.0 1.0
OE1 C:GLN179 3.0 25.2 1.0
C C:GLN212 3.2 34.4 1.0
CA C:GLN212 3.3 35.5 1.0
OD1 C:ASP96 3.4 25.9 1.0
CG2 C:THR93 3.5 35.2 1.0
NE2 C:GLN179 3.5 22.0 1.0
CD C:GLN179 3.5 22.1 1.0
C C:THR211 3.8 31.4 1.0
C C:GLY182 3.9 27.3 1.0
CG C:ASP96 3.9 23.6 1.0
CB C:SER181 4.0 36.8 1.0
OD2 C:ASP96 4.0 22.8 1.0
N C:GLY182 4.0 34.2 1.0
N C:GLN212 4.0 35.5 1.0
O C:ALA183 4.2 22.7 1.0
C C:SER181 4.2 35.6 1.0
N C:VAL213 4.3 32.8 1.0
N C:GLY185 4.3 28.7 1.0
N C:SER181 4.3 30.5 1.0
CA C:SER181 4.4 34.3 1.0
CB C:GLN212 4.5 35.4 1.0
CG C:GLN212 4.6 36.3 1.0
CA C:GLY182 4.6 32.7 1.0
C C:ALA183 4.6 22.7 1.0
CB C:THR93 4.6 35.0 1.0
CA C:GLY185 4.7 28.3 1.0
O C:SER181 4.8 35.7 1.0
OG C:SER210 4.8 26.9 1.0
CG C:GLN179 4.9 20.9 1.0
N C:ASP96 4.9 25.5 1.0
N C:ALA183 4.9 22.2 1.0

Potassium binding site 4 out of 4 in 5hw2

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Potassium binding site 4 out of 4 in the Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
D:K501

b:29.6
occ:1.00
 O D:THR211 2.7 38.5 1.0
O D:GLY182 2.7 34.9 1.0
OG D:SER181 2.8 38.8 1.0
OD1 D:ASP96 2.8 38.5 1.0
OE1 D:GLN179 2.9 38.7 1.0
O D:GLN212 3.3 30.5 1.0
CG D:ASP96 3.5 38.5 1.0
CD D:GLN179 3.5 34.3 1.0
OD2 D:ASP96 3.6 43.6 1.0
C D:GLN212 3.6 31.0 1.0
CA D:GLN212 3.6 30.5 1.0
C D:THR211 3.7 36.2 1.0
N D:GLY182 3.8 30.9 1.0
C D:GLY182 3.8 33.2 1.0
NE2 D:GLN179 4.0 24.1 1.0
N D:GLY185 4.0 32.4 1.0
O D:ALA183 4.0 44.6 1.0
CG2 D:THR93 4.1 32.7 1.0
CB D:SER181 4.1 35.4 1.0
N D:GLN212 4.2 32.8 1.0
N D:SER181 4.3 32.3 1.0
C D:SER181 4.3 33.7 1.0
CA D:GLY185 4.3 33.0 1.0
CA D:GLY182 4.4 31.9 1.0
CA D:SER181 4.4 33.7 1.0
CG D:GLN179 4.5 28.6 1.0
N D:VAL213 4.6 31.0 1.0
C D:ALA183 4.6 39.4 1.0
CB D:GLN179 4.6 27.7 1.0
OG D:SER210 4.7 48.7 1.0
CB D:ASP96 4.8 32.0 1.0
N D:ALA183 4.9 34.9 1.0
C D:VAL184 4.9 34.8 1.0
CB D:GLN212 4.9 27.6 1.0
CA D:ASP96 4.9 27.0 1.0
O D:SER210 5.0 34.0 1.0

Reference:

C.Chang, N.Maltseva, Y.Kim, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Adenylosuccinate Lyase From Francisella Tularensis Complexed with Fumaric Acid To Be Published.
Page generated: Mon Aug 12 13:51:55 2024

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