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Potassium in PDB 5hrt: Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer

Enzymatic activity of Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer

All present enzymatic activity of Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer:
3.1.4.39;

Protein crystallography data

The structure of Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer, PDB code: 5hrt was solved by K.Kato, H.Nishimasu, J.Morita, R.Ishitani, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.15 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 120.062, 208.757, 90.036, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.2

Other elements in 5hrt:

The structure of Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer (pdb code 5hrt). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer, PDB code: 5hrt:

Potassium binding site 1 out of 1 in 5hrt

Go back to Potassium Binding Sites List in 5hrt
Potassium binding site 1 out of 1 in the Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Mouse Autotaxin in Complex with A Dna Aptamer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K917

b:23.4
occ:1.00
O A:TYR665 2.3 23.1 1.0
O A:ASP668 2.4 24.8 1.0
O A:HOH1368 2.4 30.0 1.0
O A:MET671 2.4 23.1 1.0
C A:MET671 3.5 23.9 1.0
C A:TYR665 3.5 25.4 1.0
C A:ASP668 3.6 25.1 1.0
N A:MET671 4.1 28.2 1.0
CA A:LYS669 4.3 25.0 1.0
CA A:TYR665 4.4 24.4 1.0
N A:SER672 4.4 23.9 1.0
O A:LYS666 4.4 27.4 1.0
N A:LYS666 4.4 25.5 1.0
CA A:MET671 4.4 25.4 1.0
N A:LYS669 4.4 25.5 1.0
CA A:LYS666 4.4 27.2 1.0
CA A:ASP668 4.5 24.6 1.0
O A:HOH1403 4.5 37.4 1.0
CA A:SER672 4.5 24.4 1.0
C A:LYS666 4.5 28.0 1.0
N A:ASP668 4.5 26.9 1.0
C A:LYS669 4.6 26.7 1.0
CB A:ASP668 4.6 23.1 1.0
CB A:TYR665 4.7 24.2 1.0
O A:HOH1151 4.8 33.9 1.0
N A:GLN670 4.8 26.4 1.0
C A:GLN670 5.0 29.1 1.0

Reference:

K.Kato, H.Ikeda, S.Miyakawa, S.Futakawa, Y.Nonaka, M.Fujiwara, S.Okudaira, K.Kano, J.Aoki, J.Morita, R.Ishitani, H.Nishimasu, Y.Nakamura, O.Nureki. Structural Basis For Specific Inhibition of Autotaxin By A Dna Aptamer Nat.Struct.Mol.Biol. V. 23 395 2016.
ISSN: ESSN 1545-9985
PubMed: 27043297
DOI: 10.1038/NSMB.3200
Page generated: Sun Dec 13 23:59:06 2020

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