Potassium in PDB 5ft0: Crystal Structure of GP37(Dip) From Bacteriophage Phikz

The structure of Crystal Structure of GP37(Dip) From Bacteriophage Phikz, PDB code: 5ft0 was solved by A.Van Den Bossche, S.W.Hardwick, P.J.Ceyssens, H.Hendrix, M.Voet, T.Dendooven, K.J.Bandyra, M.De Maeyer, A.Aertsen, J.P.Noben, B.F.Luisi, R.Lavigne, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.03 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.040, 65.020, 85.400, 90.00, 107.68, 90.00
R / Rfree (%)	19.4 / 21.9

The binding sites of Potassium atom in the Crystal Structure of GP37(Dip) From Bacteriophage Phikz (pdb code 5ft0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of GP37(Dip) From Bacteriophage Phikz, PDB code: 5ft0:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Crystal Structure of GP37(Dip) From Bacteriophage Phikz


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of GP37(Dip) From Bacteriophage Phikz within 5.0Å range: probe atom residue distance (Å) B Occ A:K1258 b:75.4 occ:1.00 O A:TYR103 2.7 45.3 1.0 O A:ASN100 2.8 53.6 1.0 O A:ILE97 2.8 46.9 1.0 C A:ILE97 3.8 49.4 1.0 C A:ASN100 3.8 54.5 1.0 C A:TYR103 3.9 40.9 1.0 CA A:ASP101 4.0 50.2 1.0 CG2 A:ILE97 4.0 40.9 1.0 O A:ASP101 4.0 45.5 1.0 C A:ASP101 4.2 44.5 1.0 CA A:CYS98 4.4 49.7 1.0 N A:ASP101 4.4 52.2 1.0 N A:CYS98 4.5 52.6 1.0 N A:TYR103 4.6 43.1 1.0 CA A:TYR103 4.6 38.9 1.0 CB A:TYR103 4.6 37.1 1.0 CA A:ILE97 4.7 43.4 1.0 C A:CYS98 4.9 54.6 1.0 N A:ASN100 4.9 52.5 1.0 N A:ILE104 5.0 42.6 1.0 N A:GLU102 5.0 41.5 1.0 CA A:ASN100 5.0 51.6 1.0

Potassium binding site 2 out of 2 in the Crystal Structure of GP37(Dip) From Bacteriophage Phikz


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of GP37(Dip) From Bacteriophage Phikz within 5.0Å range: probe atom residue distance (Å) B Occ B:K1258 b:60.9 occ:1.00 O B:HOH2068 2.7 52.7 1.0 O B:TYR103 2.7 36.4 1.0 O B:ILE97 2.7 46.4 1.0 O B:ASN100 2.7 47.4 1.0 O B:HOH2066 2.8 47.3 1.0 C B:ILE97 3.7 40.3 1.0 C B:ASN100 3.8 48.7 1.0 C B:TYR103 3.8 32.2 1.0 CG2 B:ILE97 3.9 34.5 1.0 CA B:ASP101 4.0 48.8 1.0 O B:ASP101 4.1 48.2 1.0 C B:ASP101 4.2 46.2 1.0 N B:ASP101 4.3 53.6 1.0 CA B:CYS98 4.4 42.8 1.0 N B:CYS98 4.5 40.1 1.0 N B:TYR103 4.5 36.6 1.0 CA B:TYR103 4.5 34.3 1.0 CB B:TYR103 4.5 34.0 1.0 CA B:ILE97 4.6 35.0 1.0 CD1 B:ILE104 4.7 37.9 0.3 C B:CYS98 4.8 43.7 1.0 N B:ASN100 4.8 40.6 1.0 N B:ILE104 4.9 29.3 1.0 CA B:ASN100 4.9 40.8 1.0 CB B:ILE97 4.9 34.6 1.0 O B:CYS98 4.9 48.2 1.0

A.Van Den Bossche, S.W.Hardwick, P.J.Ceyssens, H.Hendrix, M.Voet, T.Dendooven, K.J.Bandyra, M.De Maeyer, A.Aertsen, J.P.Noben, B.F.Luisi, R.Lavigne. Structural Elucidation of A Novel Mechanism For the Bacteriophage-Based Inhibition of the Rna Degradosome. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27447594
DOI: 10.7554/ELIFE.16413