Potassium in PDB 5fq5: Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing

The structure of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing, PDB code: 5fq5 was solved by V.Olieric, T.Weinert, A.Finke, C.Anders, M.Jinek, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.91 / 2.14
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	177.740, 67.570, 188.190, 90.00, 111.31, 90.00
R / Rfree (%)	19.1 / 22.5

The structure of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Potassium atom in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing (pdb code 5fq5). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 13 binding sites of Potassium where determined in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing, PDB code: 5fq5:
Jump to Potassium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Potassium binding site 1 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:K1085 b:49.6 occ:0.80 O6 A:G13 2.8 32.3 1.0 O A:HOH3055 2.9 62.4 1.0 O4 A:U12 2.9 41.4 1.0 O A:HOH3060 3.0 32.7 1.0 O A:HOH3061 3.1 45.2 1.0 H41 E:DC16 3.4 38.4 1.0 H61 E:DA17 3.8 40.5 1.0 C4 A:U12 3.8 39.2 1.0 C6 A:G13 3.9 30.6 1.0 H42 E:DC16 3.9 38.4 1.0 H5 A:U12 4.0 45.8 1.0 N4 E:DC16 4.0 32.0 1.0 C5 A:U12 4.3 38.1 1.0 O E:HOH3013 4.4 69.1 1.0 N6 E:DA17 4.4 33.7 1.0 N7 A:G13 4.5 29.0 1.0 C5 A:G13 4.6 30.3 1.0 H62 E:DA17 4.6 40.5 1.0 O E:HOH3017 4.7 53.3 1.0 O4 A:U14 4.8 28.1 1.0 N3 A:U12 4.9 37.6 1.0 H3 A:U12 4.9 45.1 1.0

Potassium binding site 2 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:K2083 b:30.6 occ:0.88 OP2 A:A65 2.7 26.6 1.0 O4 A:U66 2.8 29.0 1.0 OG1 B:THR1102 2.8 30.3 1.0 O A:HOH3252 2.9 27.2 1.0 O A:HOH3279 2.9 33.6 1.0 O A:HOH3278 3.0 29.4 1.0 O A:HOH3254 3.2 47.4 1.0 HG1 B:THR1102 3.3 36.4 1.0 H5 A:U66 3.3 34.5 1.0 HG22 B:THR1102 3.5 36.8 1.0 C4 A:U66 3.6 30.1 1.0 H42 A:C67 3.7 32.5 1.0 HG21 B:THR1102 3.8 36.8 1.0 C5 A:U66 3.8 28.7 1.0 CG2 B:THR1102 3.9 30.7 1.0 CB B:THR1102 3.9 31.4 1.0 P A:A65 4.0 26.7 1.0 O B:HOH3444 4.3 37.4 1.0 N4 A:C67 4.4 27.1 1.0 HB B:THR1102 4.4 37.7 1.0 O A:HOH3268 4.4 34.2 1.0 OP1 A:U64 4.5 30.1 1.0 H8 A:A65 4.5 34.1 1.0 N7 A:A65 4.6 29.8 1.0 O5' A:A65 4.6 28.4 1.0 H41 A:C67 4.6 32.5 1.0 O B:HOH3593 4.6 41.1 1.0 H3' A:U64 4.7 32.6 1.0 H B:THR1102 4.7 34.2 1.0 OP1 A:A65 4.7 26.1 1.0 HG23 B:THR1102 4.8 36.8 1.0 C8 A:A65 4.9 28.4 1.0 O A:HOH3264 4.9 26.6 1.0 OP2 A:U64 4.9 30.0 1.0 O B:VAL1100 4.9 28.5 1.0 N3 A:U66 5.0 31.7 1.0 H5 A:C67 5.0 33.2 1.0

Potassium binding site 3 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ A:K2084 b:40.4 occ:0.77 O A:HOH3299 2.6 53.3 1.0 O A:HOH3006 2.8 48.8 1.0 OP2 A:G21 2.8 37.4 1.0 O A:HOH3158 2.8 32.0 1.0 O A:HOH3156 2.9 30.6 1.0 O A:HOH3101 3.4 30.4 1.0 O A:HOH3112 3.5 62.7 1.0 HB2 B:ARG403 3.7 48.2 1.0 O A:HOH3099 3.7 52.2 1.0 P A:G21 3.8 38.2 1.0 O A:HOH3165 3.9 44.8 1.0 OP1 A:G21 3.9 40.2 1.0 HB3 B:ARG403 4.1 48.2 1.0 OP2 A:U45 4.2 33.5 1.0 MG A:MG1083 4.2 62.0 1.0 O A:HOH3157 4.3 62.8 1.0 CB B:ARG403 4.3 40.2 1.0 O A:HOH3160 4.4 30.1 1.0 HG3 B:ARG403 4.4 50.5 1.0 O A:HOH3102 4.5 43.8 1.0 O5' A:G21 4.8 36.9 1.0 O B:ARG403 4.9 38.5 1.0 H5' A:A20 5.0 43.1 1.0 CG B:ARG403 5.0 42.1 1.0

Potassium binding site 4 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2365 b:32.8 occ:0.80 O A:HOH3280 2.6 37.8 1.0 O B:HOH3588 2.7 40.1 1.0 O A:HOH3283 2.7 33.5 1.0 O B:GLN1350 2.8 34.5 1.0 O4' A:A68 3.1 35.9 1.0 H1' A:A68 3.1 44.0 1.0 O A:HOH3286 3.2 35.5 1.0 C1' A:A68 3.6 36.6 1.0 HG1 B:THR1098 3.6 33.6 1.0 HB2 B:GLN1350 3.9 45.2 1.0 C B:GLN1350 3.9 36.1 1.0 H B:THR1098 4.0 33.5 1.0 O B:SER1351 4.1 32.0 1.0 H B:GLN1350 4.1 43.0 1.0 HA B:ILE1352 4.2 37.1 1.0 H4' A:A68 4.2 43.0 1.0 HG12 B:VAL1095 4.2 37.6 1.0 C4' A:A68 4.2 35.9 1.0 HG21 B:THR1098 4.2 34.6 1.0 N9 A:A68 4.2 36.2 1.0 HA B:LYS1097 4.3 33.2 1.0 C B:SER1351 4.3 31.9 1.0 OG1 B:THR1098 4.3 28.0 1.0 H8 A:A68 4.4 44.1 1.0 O5' A:A68 4.4 35.5 1.0 O A:HOH3284 4.6 30.0 1.0 CB B:GLN1350 4.6 37.6 1.0 C8 A:A68 4.6 36.8 1.0 OP1 A:A68 4.6 37.0 1.0 OP2 A:A68 4.6 34.1 1.0 CA B:GLN1350 4.6 37.7 1.0 HG11 B:VAL1095 4.7 37.6 1.0 HG13 B:VAL1095 4.7 37.6 1.0 HB3 B:GLN1350 4.7 45.2 1.0 CG1 B:VAL1095 4.7 31.3 1.0 N B:ILE1352 4.7 31.6 1.0 N B:GLN1350 4.7 35.8 1.0 P A:A68 4.8 35.2 1.0 O B:HOH3741 4.8 45.3 1.0 N B:THR1098 4.8 27.9 1.0 N B:SER1351 4.8 35.8 1.0 HA B:SER1351 4.8 43.3 1.0 C2' A:A68 4.8 37.3 1.0 C5' A:A68 4.9 35.8 1.0 O2' A:A68 4.9 36.5 1.0 CA B:ILE1352 4.9 30.9 1.0 CA B:SER1351 4.9 36.1 1.0 CG2 B:THR1098 5.0 28.8 1.0 HG22 B:THR1098 5.0 34.6 1.0

Potassium binding site 5 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2366 b:38.0 occ:0.87 O B:ARG586 2.7 37.7 1.0 O E:HOH3039 2.7 46.5 1.0 O B:HOH3356 2.7 44.2 1.0 OD1 B:ASN588 2.8 38.6 1.0 O B:HOH3357 2.8 54.3 1.0 O B:GLU584 2.9 48.0 1.0 H B:ARG586 3.4 51.3 1.0 O B:HOH3362 3.6 50.8 1.0 HG3 B:ARG586 3.6 60.9 1.0 CG B:ASN588 3.6 37.5 1.0 H B:GLU584 3.6 54.9 1.0 HD22 B:ASN588 3.7 46.6 1.0 HB3 B:GLU584 3.9 68.9 1.0 C B:ARG586 3.9 38.5 1.0 C B:GLU584 4.0 49.2 1.0 ND2 B:ASN588 4.0 38.8 1.0 O B:HOH3361 4.1 40.4 1.0 HG21 B:VAL583 4.1 41.7 1.0 N B:ARG586 4.2 42.8 1.0 HB3 B:ASP585 4.3 58.4 1.0 O A:HOH3035 4.3 49.5 1.0 N B:GLU584 4.4 45.8 1.0 H B:ASN588 4.4 40.2 1.0 HG2 B:GLU584 4.4 78.3 1.0 N B:ASN588 4.4 33.5 1.0 HA B:ASN588 4.5 41.6 1.0 CA B:GLU584 4.5 51.5 1.0 CB B:GLU584 4.5 57.4 1.0 CG B:ARG586 4.6 50.8 1.0 HA B:PHE587 4.6 39.7 1.0 HG23 B:VAL583 4.6 41.7 1.0 CA B:ARG586 4.6 42.4 1.0 C B:PHE587 4.7 33.0 1.0 OE2 B:GLU584 4.7 74.9 1.0 HD21 B:ASN588 4.8 46.6 1.0 CB B:ASN588 4.8 35.4 1.0 CA B:ASN588 4.8 34.6 1.0 CG2 B:VAL583 4.8 34.7 1.0 N B:PHE587 4.9 34.4 1.0 CG B:GLU584 4.9 65.2 1.0 HD2 B:ARG586 5.0 65.3 1.0 CA B:PHE587 5.0 33.1 1.0

Potassium binding site 6 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 6 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2367 b:34.8 occ:0.77 O B:HOH3386 2.5 52.4 1.0 O B:TYR656 2.7 34.2 1.0 O B:PHE626 2.7 42.1 1.0 O B:LEU623 2.8 30.9 1.0 O B:THR624 2.9 29.9 1.0 HA B:THR624 3.1 35.7 1.0 O B:HOH3385 3.4 51.6 1.0 C B:THR624 3.4 31.3 1.0 C B:PHE626 3.5 42.2 1.0 HG23 B:THR657 3.5 47.1 1.0 HA B:GLU627 3.6 52.1 1.0 H B:TYR656 3.6 43.9 1.0 CA B:THR624 3.7 29.7 1.0 C B:LEU623 3.8 30.9 1.0 C B:TYR656 3.9 33.6 1.0 HB3 B:ARG655 4.0 64.3 1.0 H B:PHE626 4.0 50.0 1.0 N B:GLU627 4.1 41.4 1.0 N B:PHE626 4.1 41.6 1.0 N B:THR624 4.2 29.6 1.0 HA B:THR657 4.2 42.8 1.0 CA B:GLU627 4.2 43.4 1.0 HD2 B:ARG655 4.2 73.3 1.0 HG21 B:THR657 4.2 47.1 1.0 N B:TYR656 4.3 36.5 1.0 HB2 B:GLU627 4.3 55.7 1.0 HG2 B:ARG655 4.3 70.5 1.0 CG2 B:THR657 4.3 39.2 1.0 O B:HOH3384 4.4 49.6 1.0 N B:LEU625 4.4 34.1 1.0 CA B:PHE626 4.5 42.9 1.0 OP1 E:DC16 4.5 43.8 1.0 C B:LEU625 4.6 39.4 1.0 HD12 B:ILE632 4.6 49.6 1.0 HB3 B:GLU627 4.6 55.7 1.0 CB B:GLU627 4.7 46.4 1.0 CB B:ARG655 4.7 53.6 1.0 CA B:TYR656 4.8 35.0 1.0 H B:GLU627 4.8 49.7 1.0 HA B:ARG655 4.8 59.6 1.0 N B:THR657 4.8 34.6 1.0 CG B:ARG655 4.9 58.8 1.0 HG21 B:THR624 4.9 28.7 1.0 CA B:THR657 4.9 35.6 1.0 HA B:PHE626 4.9 51.4 1.0 HA B:LEU623 4.9 36.9 1.0 HG22 B:THR657 4.9 47.1 1.0 H B:THR624 5.0 35.6 1.0 H B:LEU625 5.0 40.9 1.0

Potassium binding site 7 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 7 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2368 b:53.9 occ:0.94 O B:TYR362 2.7 39.2 1.0 O A:HOH3107 2.8 52.8 1.0 O B:ALA367 2.8 47.6 1.0 O B:GLY365 2.8 50.4 1.0 H B:ALA367 3.1 63.4 1.0 O B:GLY361 3.1 44.5 1.0 HZ2 B:LYS401 3.3 49.2 1.0 N B:ALA367 3.4 52.8 1.0 HA B:TYR362 3.5 53.0 1.0 C B:TYR362 3.5 43.0 1.0 C B:GLY365 3.6 50.7 1.0 HA2 B:GLY366 3.6 66.3 1.0 C B:ALA367 3.7 48.2 1.0 O B:HOH3225 3.7 42.6 1.0 HZ3 B:LYS401 3.7 49.2 1.0 C B:GLY366 3.9 56.8 1.0 NZ B:LYS401 3.9 41.0 1.0 CA B:TYR362 4.0 44.1 1.0 CA B:GLY366 4.0 55.2 1.0 HZ1 B:LYS401 4.1 49.2 1.0 CA B:ALA367 4.1 51.4 1.0 N B:GLY366 4.1 54.6 1.0 O A:HOH3100 4.2 64.6 1.0 HB1 B:ALA367 4.2 62.6 1.0 C B:GLY361 4.2 45.3 1.0 H B:GLY365 4.3 60.3 1.0 K B:K2373 4.4 69.9 0.9 N B:GLY365 4.5 50.2 1.0 HD1 B:TYR362 4.5 52.2 1.0 N B:ILE363 4.5 44.7 1.0 OP1 A:U22 4.5 36.0 1.0 N B:TYR362 4.6 45.8 1.0 CA B:GLY365 4.6 50.9 1.0 C B:ILE363 4.6 47.4 1.0 O B:ILE363 4.7 45.9 1.0 O B:GLY366 4.7 58.2 1.0 CB B:ALA367 4.7 52.2 1.0 HA B:ILE363 4.7 55.0 1.0 HA B:SER368 4.8 53.3 1.0 H B:GLY366 4.8 65.5 1.0 N B:SER368 4.8 45.6 1.0 CA B:ILE363 4.9 45.9 1.0 HA B:ALA367 4.9 61.6 1.0 N B:ASP364 5.0 54.1 1.0 C B:ASP364 5.0 55.1 1.0 HA3 B:GLY366 5.0 66.3 1.0

Potassium binding site 8 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 8 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2369 b:58.8 occ:0.87 O B:HOH3174 1.9 53.8 1.0 O B:HOH3021 2.5 77.7 1.0 O B:GLU232 2.8 64.4 1.0 HG23 B:ILE226 2.9 63.4 1.0 O B:LEU229 2.9 74.5 1.0 O B:ILE226 2.9 52.4 1.0 O B:HOH3022 3.0 73.9 1.0 H B:GLU232 3.3 84.3 1.0 HG21 B:ILE226 3.4 63.4 1.0 HA B:ALA227 3.5 70.4 1.0 CG2 B:ILE226 3.5 52.9 1.0 HA B:PRO230 3.6 69.8 1.0 C B:ILE226 3.8 54.0 1.0 C B:GLU232 3.9 63.9 1.0 C B:LEU229 4.0 64.1 1.0 HG22 B:ILE226 4.0 63.4 1.0 H B:GLY231 4.1 91.6 1.0 N B:GLU232 4.1 70.3 1.0 H B:LEU229 4.2 66.7 1.0 CA B:ALA227 4.3 58.6 1.0 HA B:LYS233 4.3 71.5 1.0 HB3 B:GLU232 4.4 78.1 1.0 CA B:PRO230 4.4 58.2 1.0 N B:ALA227 4.4 58.5 1.0 N B:GLY231 4.5 76.3 1.0 CA B:GLU232 4.5 65.7 1.0 HB2 B:LEU229 4.6 64.8 1.0 N B:PRO230 4.6 58.9 1.0 C B:ALA227 4.7 58.4 1.0 O B:ALA227 4.7 57.3 1.0 O B:HOH3173 4.7 59.8 1.0 C B:PRO230 4.7 60.6 1.0 CB B:ILE226 4.7 54.4 1.0 CA B:ILE226 4.8 53.5 1.0 N B:LEU229 4.8 55.6 1.0 N B:LYS233 4.9 60.7 1.0 HA B:ILE226 4.9 64.2 1.0 HZ3 B:LYS234 4.9 87.3 1.0 CA B:LEU229 4.9 57.3 1.0 CB B:GLU232 5.0 65.0 1.0

Potassium binding site 9 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 9 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2370 b:83.4 occ:1.00 O B:HOH3109 2.6 68.9 1.0 O B:HOH3108 2.7 66.9 1.0 O B:HOH3111 2.7 77.4 1.0 O B:LYS111 2.9 48.7 1.0 O B:GLU108 2.9 45.6 1.0 O B:HOH3112 3.4 60.8 1.0 HB2 B:LYS111 3.7 51.1 1.0 HG2 B:GLU108 3.8 56.0 1.0 C B:LYS111 3.9 47.1 1.0 C B:GLU108 4.1 46.7 1.0 HA B:GLU109 4.2 71.7 1.0 O B:GLU109 4.2 61.1 1.0 H B:LYS111 4.2 53.1 1.0 CB B:LYS111 4.4 42.6 1.0 N B:LYS111 4.5 44.3 1.0 HB3 B:LYS111 4.5 51.1 1.0 CA B:LYS111 4.5 45.1 1.0 HZ3 B:LYS112 4.5 80.3 1.0 C B:GLU109 4.5 58.5 1.0 HG3 B:GLU108 4.6 56.0 1.0 CG B:GLU108 4.6 46.7 1.0 CA B:GLU109 4.7 59.8 1.0 HA B:LYS112 4.8 64.8 1.0 O B:HIS113 4.8 47.1 1.0 N B:GLU109 4.8 55.7 1.0 HA B:GLU108 4.9 51.5 1.0 N B:LYS112 5.0 52.5 1.0

Potassium binding site 10 out of 13 in the Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 10 of Crystal Structure of CAS9-Sgrna-Dna Complex Solved By Native Sad Phasing within 5.0Å range: probe atom residue distance (Å) B Occ B:K2371 b:62.4 occ:1.00 O B:HOH3399 2.6 76.4 1.0 O B:PHE643 2.6 57.9 1.0 O B:ALA640 2.8 53.0 1.0 O B:HOH3401 3.0 58.5 1.0 O B:HOH3396 3.1 66.2 1.0 HA B:HIS641 3.3 63.5 1.0 O B:HOH3395 3.4 67.5 1.0 C B:PHE643 3.8 57.2 1.0 HA B:ASP644 3.9 80.0 1.0 C B:ALA640 3.9 51.6 1.0 H B:PHE643 4.0 60.5 1.0 CA B:HIS641 4.1 53.0 1.0 O B:HOH3397 4.2 61.0 1.0 C B:HIS641 4.3 52.6 1.0 O B:HIS641 4.3 53.5 1.0 N B:HIS641 4.4 52.2 1.0 N B:PHE643 4.5 50.5 1.0 H B:ASP645 4.5 84.2 1.0 CA B:ASP644 4.5 66.6 1.0 N B:ASP644 4.6 61.8 1.0 N B:ASP645 4.7 70.2 1.0 HB2 B:ALA640 4.7 60.4 1.0 C B:ASP644 4.8 67.1 1.0 CA B:PHE643 4.8 52.8 1.0 N B:LEU642 5.0 47.9 1.0

V.Olieric, T.Weinert, A.D.Finke, C.Anders, D.Li, N.Olieric, C.N.Borca, M.O.Steinmetz, M.Caffrey, M.Jinek, M.Wang. Data-Collection Strategy For Challenging Native Sad Phasing. Acta Crystallogr.,Sect.D V. 72 421 2016.
ISSN: ISSN 0907-4449
PubMed: 26960129
DOI: 10.1107/S2059798315024110