Atomistry » Potassium » PDB 5f6q-5g13 » 5fkq
Atomistry »
  Potassium »
    PDB 5f6q-5g13 »
      5fkq »

Potassium in PDB 5fkq: Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

Enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase

All present enzymatic activity of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase:
3.2.1.151;

Protein crystallography data

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkq was solved by M.Attia, J.Stepper, G.J.Davies, H.Brumer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 102.82 / 1.71
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 84.002, 94.116, 105.640, 90.00, 103.27, 90.00
R / Rfree (%) 19.248 / 22.462

Other elements in 5fkq:

The structure of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase also contains other interesting chemical elements:

Bromine (Br) 2 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase (pdb code 5fkq). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase, PDB code: 5fkq:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in 5fkq

Go back to Potassium Binding Sites List in 5fkq
Potassium binding site 1 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K1769

b:13.7
occ:1.00
 O A:HOH2241 2.6 29.8 1.0
O A:ILE351 2.6 11.3 1.0
O A:TYR329 2.8 11.8 1.0
O A:GLY300 2.8 11.0 1.0
BR A:BR1766 3.5 18.2 1.0
O A:HOH2107 3.5 10.5 1.0
C A:ILE351 3.8 10.8 1.0
C A:GLY300 3.8 11.8 1.0
C A:TYR329 4.0 12.7 1.0
CA A:ALA301 4.1 11.8 1.0
CG2 A:ILE351 4.1 10.5 1.0
CA A:PHE330 4.3 11.0 1.0
N A:ALA301 4.4 11.7 1.0
CB A:PHE330 4.4 11.4 1.0
CD2 A:TYR329 4.4 11.9 1.0
N A:ILE351 4.5 10.7 1.0
N A:PHE330 4.6 12.3 1.0
CB A:ALA301 4.6 12.0 1.0
CA A:ILE351 4.7 11.0 1.0
N A:ALA352 4.8 10.5 1.0
CA A:ALA352 4.8 11.4 1.0
N A:GLY300 5.0 11.6 1.0
O A:HOH2240 5.0 12.1 1.0
CA A:GLY300 5.0 11.5 1.0

Potassium binding site 2 out of 2 in 5fkq

Go back to Potassium Binding Sites List in 5fkq
Potassium binding site 2 out of 2 in the Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Unraveling the First Step of Xyloglucan Degradation By the Soil Saprophyte Cellvibrio Japonicus Through the Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K1772

b:14.3
occ:1.00
 O B:ILE351 2.5 9.8 1.0
O B:TYR329 2.7 11.9 1.0
O B:GLY300 2.8 12.8 1.0
O B:HOH2252 3.2 22.3 1.0
BR B:BR1766 3.5 19.9 1.0
C B:ILE351 3.8 10.8 1.0
C B:GLY300 3.8 12.9 1.0
C B:TYR329 3.9 11.8 1.0
CG2 B:ILE351 4.0 10.6 1.0
CA B:ALA301 4.1 12.6 1.0
CA B:PHE330 4.2 11.7 1.0
N B:ALA301 4.4 10.9 1.0
CB B:PHE330 4.4 12.2 1.0
N B:ILE351 4.4 9.8 1.0
N B:PHE330 4.5 12.9 1.0
CA B:ILE351 4.6 9.7 1.0
CD2 B:TYR329 4.6 16.0 1.0
N B:ALA352 4.7 11.2 1.0
CB B:ALA301 4.7 13.3 1.0
N B:GLY300 4.8 11.8 1.0
CA B:ALA352 4.8 12.4 1.0
O B:HOH2224 4.9 23.0 1.0
CB B:ILE351 4.9 10.7 1.0
CA B:GLY300 5.0 11.4 1.0

Reference:

M.Attia, J.Stepper, G.J.Davies, H.Brumer. Functional and Structural Characterization of A Potent GH74 Endo-Xyloglucanase From the Soil Saprophyte Cellvibrio Japonicus Unravels the First Step of Xyloglucan Degradation. Febs J. V. 283 1701 2016.
ISSN: ISSN 1742-464X
PubMed: 26929175
DOI: 10.1111/FEBS.13696
Page generated: Mon Aug 12 13:33:51 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy