Atomistry » Potassium » PDB 5f6q-5g13 » 5fht
Atomistry »
  Potassium »
    PDB 5f6q-5g13 »
      5fht »

Potassium in PDB 5fht: HTRA2 Protease Mutant V226K

Enzymatic activity of HTRA2 Protease Mutant V226K

All present enzymatic activity of HTRA2 Protease Mutant V226K:
3.4.21.108;

Protein crystallography data

The structure of HTRA2 Protease Mutant V226K, PDB code: 5fht was solved by P.Golik, G.Dubin, D.Zurawa-Janicka, B.Lipinska, M.Jarzab, T.Wenta, A.Gieldon, A.Ciarkowski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.57 / 1.95
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 86.010, 86.010, 126.700, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 22.8

Other elements in 5fht:

The structure of HTRA2 Protease Mutant V226K also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the HTRA2 Protease Mutant V226K (pdb code 5fht). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the HTRA2 Protease Mutant V226K, PDB code: 5fht:

Potassium binding site 1 out of 1 in 5fht

Go back to Potassium Binding Sites List in 5fht
Potassium binding site 1 out of 1 in the HTRA2 Protease Mutant V226K


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of HTRA2 Protease Mutant V226K within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K403

b:34.9
occ:1.00
OG1 A:THR235 2.9 26.9 1.0
O A:HOH606 3.0 31.3 1.0
O A:HOH578 3.0 30.6 1.0
O A:HOH550 3.2 29.9 1.0
N A:VAL159 3.3 27.4 1.0
CA A:ASN158 3.8 31.8 1.0
CB A:THR235 3.8 30.0 1.0
CG2 A:VAL159 4.0 29.0 1.0
CB A:ASN158 4.0 32.6 1.0
C A:ASN158 4.1 31.8 1.0
CB A:VAL159 4.1 28.5 1.0
ND2 A:ASN158 4.2 34.3 1.0
CB A:ALA291 4.2 25.4 1.0
CA A:VAL159 4.3 27.3 1.0
CD A:LYS93 4.4 38.8 1.0
CG A:ASN158 4.4 34.2 1.0
CE A:LYS93 4.5 36.0 1.0
CG A:LYS93 4.5 37.9 1.0
N A:ALA291 4.6 26.0 1.0
O A:HOH620 4.7 31.5 1.0
CG2 A:THR235 4.7 29.5 1.0
OH A:TYR161 4.8 28.2 1.0
O A:VAL159 4.8 27.0 1.0
N A:THR235 4.9 28.0 1.0
NZ A:LYS93 4.9 39.7 1.0
CA A:ALA291 4.9 27.9 1.0
CA A:THR235 5.0 28.4 1.0

Reference:

A.Gieldon, D.Zurawa-Janicka, M.Jarzab, T.Wenta, P.Golik, G.Dubin, B.Lipinska, J.Ciarkowski. Distinct 3D Architecture and Dynamics of the Human HTRA2(Omi) Protease and Its Mutated Variants. Plos One V. 11 61526 2016.
ISSN: ESSN 1932-6203
PubMed: 27571206
DOI: 10.1371/JOURNAL.PONE.0161526
Page generated: Sun Dec 13 23:57:07 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy