Potassium in PDB 5fg0: Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form

The structure of Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form, PDB code: 5fg0 was solved by S.K.Doamekpor, C.D.Lima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.35 / 2.41
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	88.514, 80.352, 97.325, 90.00, 116.58, 90.00
R / Rfree (%)	17.6 / 21.2

The binding sites of Potassium atom in the Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form (pdb code 5fg0). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form, PDB code: 5fg0:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form within 5.0Å range: probe atom residue distance (Å) B Occ A:K501 b:49.4 occ:1.00 O A:VAL185 2.7 32.9 1.0 OH A:TYR208 2.8 39.0 1.0 O A:HOH648 2.8 57.6 1.0 OG A:SER245 2.8 41.9 1.0 O A:GLU188 2.8 47.6 1.0 O A:HOH675 2.8 44.8 1.0 CB A:SER245 3.7 35.4 1.0 CZ A:TYR208 3.7 41.5 1.0 C A:VAL185 3.7 30.5 1.0 C A:GLU188 3.9 49.4 1.0 CB A:ASN189 3.9 48.4 1.0 CA A:ASN189 4.1 49.9 1.0 O A:HOH670 4.1 52.3 1.0 O A:ILE184 4.2 33.6 1.0 CE2 A:TYR208 4.4 41.3 1.0 N A:ASN189 4.5 48.8 1.0 OD2 A:ASP243 4.5 49.5 1.0 CE1 A:TYR208 4.5 35.6 1.0 O A:VAL186 4.5 44.0 1.0 CA A:VAL185 4.6 26.9 1.0 N A:VAL186 4.6 35.5 1.0 C A:VAL186 4.7 37.9 1.0 CA A:VAL186 4.7 40.8 1.0

Potassium binding site 2 out of 2 in the Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Structure of the Conserved Yeast Listerin (LTN1) N-Terminal Domain, Monoclinic Form within 5.0Å range: probe atom residue distance (Å) B Occ B:K501 b:47.3 occ:1.00 O B:VAL185 2.7 35.4 1.0 OG B:SER245 2.7 40.4 1.0 O B:GLU188 2.8 40.4 1.0 OH B:TYR208 2.8 37.5 1.0 CZ B:TYR208 3.7 33.4 1.0 CB B:SER245 3.8 35.9 1.0 C B:VAL185 3.8 31.0 1.0 C B:GLU188 3.9 41.7 1.0 CB B:ASN189 3.9 47.3 1.0 CA B:ASN189 4.0 44.3 1.0 CE2 B:TYR208 4.3 39.5 1.0 OD2 B:ASP243 4.3 44.0 1.0 O B:VAL186 4.4 39.8 1.0 O B:ILE184 4.4 37.3 1.0 N B:ASN189 4.4 45.3 1.0 CE1 B:TYR208 4.5 33.1 1.0 N B:VAL186 4.6 38.5 1.0 CA B:VAL185 4.6 28.0 1.0 C B:VAL186 4.7 37.1 1.0 CA B:VAL186 4.8 39.1 1.0 O B:HOH652 4.8 50.5 1.0 OD1 B:ASP243 4.9 41.3 1.0 CG B:ASP243 4.9 42.4 1.0

S.K.Doamekpor, J.W.Lee, N.L.Hepowit, C.Wu, C.Charenton, M.Leonard, M.H.Bengtson, K.R.Rajashankar, M.S.Sachs, C.D.Lima, C.A.Joazeiro. Structure and Function of the Yeast Listerin (LTN1) Conserved N-Terminal Domain in Binding to Stalled 60S Ribosomal Subunits. Proc.Natl.Acad.Sci.Usa V. 113 E4151 2016.
ISSN: ESSN 1091-6490
PubMed: 27385828
DOI: 10.1073/PNAS.1605951113