Potassium in PDB 5dww: Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Protein crystallography data
The structure of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop, PDB code: 5dww
was solved by
I.Russo Krauss,
G.N.Parkinson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.00 /
2.79
|
Space group
|
I 2 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.610,
101.230,
145.450,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.5 /
25.3
|
Potassium Binding Sites:
The binding sites of Potassium atom in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
(pdb code 5dww). This binding sites where shown within
5.0 Angstroms radius around Potassium atom.
In total 10 binding sites of Potassium where determined in the
Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop, PDB code: 5dww:
Jump to Potassium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Potassium binding site 1 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 1 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 1 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K101
b:52.7
occ:1.00
|
O6
|
C:DG5
|
2.7
|
48.6
|
1.0
|
O6
|
C:DG1
|
2.7
|
49.4
|
1.0
|
O6
|
A:DG1
|
2.7
|
51.7
|
1.0
|
O6
|
C:DG14
|
2.9
|
59.5
|
1.0
|
O6
|
A:DG5
|
2.9
|
60.6
|
1.0
|
O6
|
A:DG14
|
2.9
|
58.6
|
1.0
|
O6
|
C:DG9
|
3.0
|
54.5
|
1.0
|
O6
|
A:DG9
|
3.2
|
55.4
|
1.0
|
K
|
C:K102
|
3.4
|
42.6
|
1.0
|
K
|
A:K103
|
3.4
|
48.9
|
1.0
|
C6
|
C:DG5
|
3.5
|
49.7
|
1.0
|
C6
|
C:DG1
|
3.6
|
47.9
|
1.0
|
C6
|
C:DG14
|
3.6
|
60.7
|
1.0
|
C6
|
A:DG1
|
3.6
|
57.4
|
1.0
|
C6
|
A:DG5
|
3.7
|
62.4
|
1.0
|
C6
|
C:DG9
|
3.7
|
60.1
|
1.0
|
C6
|
A:DG14
|
3.8
|
56.5
|
1.0
|
N1
|
C:DG5
|
3.8
|
53.2
|
1.0
|
C6
|
A:DG9
|
3.8
|
62.8
|
1.0
|
N1
|
C:DG14
|
3.9
|
62.2
|
1.0
|
N1
|
C:DG9
|
3.9
|
57.8
|
1.0
|
N1
|
A:DG5
|
3.9
|
59.5
|
1.0
|
N1
|
A:DG1
|
3.9
|
57.8
|
1.0
|
N1
|
C:DG1
|
4.0
|
54.1
|
1.0
|
N1
|
A:DG9
|
4.1
|
75.4
|
1.0
|
N1
|
A:DG14
|
4.1
|
61.0
|
1.0
|
C5
|
C:DG1
|
4.7
|
48.3
|
1.0
|
C5
|
C:DG14
|
4.8
|
59.2
|
1.0
|
C5
|
C:DG5
|
4.8
|
44.7
|
1.0
|
C5
|
A:DG1
|
4.9
|
55.9
|
1.0
|
C5
|
A:DG5
|
4.9
|
54.4
|
1.0
|
C5
|
C:DG9
|
4.9
|
57.8
|
1.0
|
C5
|
A:DG9
|
4.9
|
62.3
|
1.0
|
C5
|
A:DG14
|
5.0
|
53.9
|
1.0
|
|
Potassium binding site 2 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 2 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 2 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K102
b:52.0
occ:1.00
|
O6
|
A:DG7
|
2.5
|
56.2
|
1.0
|
O6
|
A:DG10
|
2.6
|
70.0
|
1.0
|
O6
|
A:DG11
|
2.6
|
54.3
|
1.0
|
O6
|
A:DG3
|
2.7
|
47.2
|
1.0
|
O6
|
A:DG6
|
2.7
|
53.2
|
1.0
|
O6
|
A:DG16
|
2.9
|
66.3
|
1.0
|
O6
|
A:DG15
|
3.0
|
62.1
|
1.0
|
O6
|
A:DG2
|
3.0
|
54.2
|
1.0
|
K
|
A:K103
|
3.4
|
48.9
|
1.0
|
C6
|
A:DG7
|
3.4
|
56.9
|
1.0
|
C6
|
A:DG6
|
3.5
|
50.0
|
1.0
|
C6
|
A:DG10
|
3.5
|
64.8
|
1.0
|
C6
|
A:DG3
|
3.6
|
56.0
|
1.0
|
N1
|
A:DG7
|
3.6
|
60.7
|
1.0
|
C6
|
A:DG11
|
3.7
|
55.9
|
1.0
|
N1
|
A:DG6
|
3.7
|
52.2
|
1.0
|
N1
|
A:DG3
|
3.8
|
52.4
|
1.0
|
C6
|
A:DG16
|
3.8
|
60.4
|
1.0
|
C6
|
A:DG2
|
3.8
|
52.0
|
1.0
|
C6
|
A:DG15
|
3.8
|
59.4
|
1.0
|
N1
|
A:DG10
|
4.0
|
61.7
|
1.0
|
N1
|
A:DG11
|
4.0
|
56.6
|
1.0
|
N1
|
A:DG2
|
4.0
|
53.4
|
1.0
|
N1
|
A:DG16
|
4.0
|
60.0
|
1.0
|
N1
|
A:DG15
|
4.1
|
58.9
|
1.0
|
N6
|
A:DA19
|
4.3
|
86.0
|
1.0
|
N1
|
A:DA19
|
4.5
|
82.5
|
1.0
|
C6
|
A:DA19
|
4.5
|
83.2
|
1.0
|
C5
|
A:DG6
|
4.7
|
45.6
|
1.0
|
C5
|
A:DG10
|
4.7
|
64.7
|
1.0
|
C5
|
A:DG7
|
4.8
|
52.9
|
1.0
|
C2
|
A:DG6
|
4.9
|
51.2
|
1.0
|
C5
|
A:DG3
|
4.9
|
57.6
|
1.0
|
C2
|
A:DG7
|
5.0
|
58.9
|
1.0
|
C5
|
A:DG2
|
5.0
|
48.9
|
1.0
|
C5
|
A:DG11
|
5.0
|
56.3
|
1.0
|
O6
|
A:DG9
|
5.0
|
55.4
|
1.0
|
|
Potassium binding site 3 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 3 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 3 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:K103
b:48.9
occ:1.00
|
O6
|
A:DG9
|
2.4
|
55.4
|
1.0
|
O6
|
A:DG15
|
2.7
|
62.1
|
1.0
|
O6
|
A:DG14
|
2.7
|
58.6
|
1.0
|
O6
|
A:DG6
|
2.8
|
53.2
|
1.0
|
O6
|
A:DG10
|
2.8
|
70.0
|
1.0
|
O6
|
A:DG5
|
2.8
|
60.6
|
1.0
|
O6
|
A:DG2
|
2.9
|
54.2
|
1.0
|
O6
|
A:DG1
|
3.0
|
51.7
|
1.0
|
K
|
A:K101
|
3.4
|
52.7
|
1.0
|
C6
|
A:DG9
|
3.4
|
62.8
|
1.0
|
K
|
A:K102
|
3.4
|
52.0
|
1.0
|
C6
|
A:DG15
|
3.6
|
59.4
|
1.0
|
C6
|
A:DG10
|
3.6
|
64.8
|
1.0
|
C6
|
A:DG6
|
3.6
|
50.0
|
1.0
|
C6
|
A:DG14
|
3.6
|
56.5
|
1.0
|
C6
|
A:DG5
|
3.7
|
62.4
|
1.0
|
N1
|
A:DG9
|
3.7
|
75.4
|
1.0
|
C6
|
A:DG2
|
3.8
|
52.0
|
1.0
|
C6
|
A:DG1
|
3.8
|
57.4
|
1.0
|
N1
|
A:DG5
|
3.8
|
59.5
|
1.0
|
N1
|
A:DG6
|
3.9
|
52.2
|
1.0
|
N1
|
A:DG15
|
3.9
|
58.9
|
1.0
|
N1
|
A:DG10
|
3.9
|
61.7
|
1.0
|
N1
|
A:DG2
|
4.0
|
53.4
|
1.0
|
N1
|
A:DG1
|
4.1
|
57.8
|
1.0
|
N1
|
A:DG14
|
4.1
|
61.0
|
1.0
|
C5
|
A:DG9
|
4.7
|
62.3
|
1.0
|
C5
|
A:DG10
|
4.8
|
64.7
|
1.0
|
C5
|
A:DG14
|
4.8
|
53.9
|
1.0
|
C5
|
A:DG15
|
4.8
|
56.8
|
1.0
|
C5
|
A:DG6
|
4.9
|
45.6
|
1.0
|
C5
|
A:DG5
|
4.9
|
54.4
|
1.0
|
C5
|
A:DG1
|
5.0
|
55.9
|
1.0
|
O6
|
A:DG11
|
5.0
|
54.3
|
1.0
|
|
Potassium binding site 4 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 4 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 4 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K101
b:45.3
occ:1.00
|
O6
|
C:DG7
|
2.4
|
46.6
|
1.0
|
O6
|
C:DG11
|
2.5
|
48.0
|
1.0
|
O6
|
C:DG3
|
2.6
|
45.8
|
1.0
|
O6
|
C:DG16
|
2.7
|
46.1
|
1.0
|
O6
|
C:DG15
|
2.8
|
50.5
|
1.0
|
O6
|
C:DG2
|
2.9
|
47.3
|
1.0
|
O6
|
C:DG10
|
3.0
|
51.9
|
1.0
|
O6
|
C:DG6
|
3.0
|
55.9
|
1.0
|
K
|
C:K102
|
3.4
|
42.6
|
1.0
|
C6
|
C:DG7
|
3.4
|
48.2
|
1.0
|
C6
|
C:DG11
|
3.5
|
55.9
|
1.0
|
C6
|
C:DG3
|
3.6
|
51.9
|
1.0
|
C6
|
C:DG16
|
3.6
|
42.6
|
1.0
|
C6
|
C:DG2
|
3.7
|
48.6
|
1.0
|
C6
|
C:DG6
|
3.7
|
52.8
|
1.0
|
C6
|
C:DG15
|
3.7
|
53.7
|
1.0
|
N1
|
C:DG11
|
3.7
|
62.7
|
1.0
|
N1
|
C:DG7
|
3.7
|
46.9
|
1.0
|
N1
|
C:DG16
|
3.8
|
41.1
|
1.0
|
C6
|
C:DG10
|
3.8
|
51.7
|
1.0
|
N1
|
C:DG3
|
3.8
|
52.7
|
1.0
|
N1
|
C:DG6
|
3.9
|
51.3
|
1.0
|
N1
|
C:DG2
|
3.9
|
53.1
|
1.0
|
N1
|
C:DG15
|
4.0
|
52.8
|
1.0
|
N6
|
C:DA19
|
4.1
|
66.7
|
1.0
|
N1
|
C:DG10
|
4.1
|
52.5
|
1.0
|
N1
|
C:DA19
|
4.1
|
70.5
|
1.0
|
C6
|
C:DA19
|
4.2
|
66.8
|
1.0
|
C5
|
C:DG7
|
4.8
|
45.1
|
1.0
|
C5
|
C:DG2
|
4.8
|
47.5
|
1.0
|
C2
|
C:DA19
|
4.8
|
74.6
|
1.0
|
C5
|
C:DG6
|
4.8
|
48.7
|
1.0
|
C5
|
C:DG11
|
4.8
|
53.9
|
1.0
|
C5
|
C:DA19
|
4.9
|
64.8
|
1.0
|
C5
|
C:DG3
|
4.9
|
48.5
|
1.0
|
C5
|
C:DG16
|
4.9
|
40.5
|
1.0
|
C5
|
C:DG15
|
5.0
|
51.5
|
1.0
|
C5
|
C:DG10
|
5.0
|
49.8
|
1.0
|
|
Potassium binding site 5 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 5 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 5 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:K102
b:42.6
occ:1.00
|
O6
|
C:DG10
|
2.6
|
51.9
|
1.0
|
O6
|
C:DG9
|
2.6
|
54.5
|
1.0
|
O6
|
C:DG6
|
2.6
|
55.9
|
1.0
|
O6
|
C:DG14
|
2.6
|
59.5
|
1.0
|
O6
|
C:DG2
|
2.7
|
47.3
|
1.0
|
O6
|
C:DG1
|
2.8
|
49.4
|
1.0
|
O6
|
C:DG15
|
2.8
|
50.5
|
1.0
|
O6
|
C:DG5
|
2.8
|
48.6
|
1.0
|
K
|
A:K101
|
3.4
|
52.7
|
1.0
|
K
|
C:K101
|
3.4
|
45.3
|
1.0
|
C6
|
C:DG10
|
3.5
|
51.7
|
1.0
|
C6
|
C:DG6
|
3.5
|
52.8
|
1.0
|
C6
|
C:DG9
|
3.6
|
60.1
|
1.0
|
C6
|
C:DG1
|
3.6
|
47.9
|
1.0
|
C6
|
C:DG5
|
3.6
|
49.7
|
1.0
|
C6
|
C:DG14
|
3.6
|
60.7
|
1.0
|
C6
|
C:DG15
|
3.6
|
53.7
|
1.0
|
C6
|
C:DG2
|
3.6
|
48.6
|
1.0
|
N1
|
C:DG10
|
3.8
|
52.5
|
1.0
|
N1
|
C:DG6
|
3.8
|
51.3
|
1.0
|
N1
|
C:DG9
|
3.9
|
57.8
|
1.0
|
N1
|
C:DG15
|
3.9
|
52.8
|
1.0
|
N1
|
C:DG5
|
3.9
|
53.2
|
1.0
|
N1
|
C:DG1
|
3.9
|
54.1
|
1.0
|
N1
|
C:DG2
|
3.9
|
53.1
|
1.0
|
N1
|
C:DG14
|
3.9
|
62.2
|
1.0
|
C5
|
C:DG10
|
4.8
|
49.8
|
1.0
|
C5
|
C:DG5
|
4.8
|
44.7
|
1.0
|
O6
|
C:DG11
|
4.8
|
48.0
|
1.0
|
C5
|
C:DG9
|
4.8
|
57.8
|
1.0
|
C5
|
C:DG15
|
4.8
|
51.5
|
1.0
|
C5
|
C:DG1
|
4.8
|
48.3
|
1.0
|
C5
|
C:DG6
|
4.8
|
48.7
|
1.0
|
C5
|
C:DG14
|
4.9
|
59.2
|
1.0
|
C5
|
C:DG2
|
4.9
|
47.5
|
1.0
|
O6
|
C:DG7
|
4.9
|
46.6
|
1.0
|
|
Potassium binding site 6 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 6 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 6 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K101
b:66.3
occ:1.00
|
O6
|
E:DG2
|
2.4
|
67.1
|
1.0
|
O6
|
E:DG15
|
2.4
|
62.4
|
1.0
|
O6
|
E:DG6
|
2.6
|
70.9
|
1.0
|
O6
|
E:DG11
|
2.7
|
86.0
|
1.0
|
O6
|
E:DG10
|
2.8
|
81.0
|
1.0
|
O6
|
E:DG16
|
3.0
|
74.6
|
1.0
|
O6
|
E:DG7
|
3.0
|
85.1
|
1.0
|
O6
|
E:DG3
|
3.2
|
86.9
|
1.0
|
C6
|
E:DG2
|
3.4
|
77.4
|
1.0
|
K
|
E:K102
|
3.4
|
62.1
|
1.0
|
C6
|
E:DG15
|
3.5
|
64.8
|
1.0
|
C6
|
E:DG6
|
3.5
|
77.1
|
1.0
|
C6
|
E:DG10
|
3.6
|
84.5
|
1.0
|
N1
|
E:DG6
|
3.7
|
79.0
|
1.0
|
N1
|
E:DG2
|
3.7
|
80.6
|
1.0
|
C6
|
E:DG11
|
3.8
|
76.4
|
1.0
|
C6
|
E:DG7
|
3.8
|
82.5
|
1.0
|
C6
|
E:DG16
|
3.8
|
75.4
|
1.0
|
N1
|
E:DG15
|
3.9
|
67.4
|
1.0
|
N1
|
E:DG10
|
3.9
|
83.2
|
1.0
|
N1
|
E:DG7
|
3.9
|
81.2
|
1.0
|
C6
|
E:DG3
|
3.9
|
80.0
|
1.0
|
N1
|
E:DG16
|
4.0
|
81.7
|
1.0
|
N1
|
E:DG11
|
4.1
|
75.8
|
1.0
|
N1
|
E:DG3
|
4.2
|
77.7
|
1.0
|
N6
|
E:DA19
|
4.3
|
0.4
|
1.0
|
C6
|
E:DA19
|
4.6
|
0.5
|
1.0
|
C5
|
E:DG2
|
4.7
|
77.7
|
1.0
|
C5
|
E:DG15
|
4.7
|
64.3
|
1.0
|
C5
|
E:DG6
|
4.8
|
75.7
|
1.0
|
C5
|
E:DG10
|
4.8
|
81.3
|
1.0
|
O6
|
E:DG14
|
4.9
|
61.0
|
1.0
|
C2
|
E:DG6
|
4.9
|
70.9
|
1.0
|
|
Potassium binding site 7 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 7 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 7 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K102
b:62.1
occ:1.00
|
O6
|
E:DG14
|
2.3
|
61.0
|
1.0
|
O6
|
E:DG1
|
2.5
|
57.5
|
1.0
|
O6
|
E:DG9
|
2.6
|
67.1
|
1.0
|
O6
|
E:DG5
|
2.7
|
62.0
|
1.0
|
O6
|
E:DG10
|
2.8
|
81.0
|
1.0
|
O6
|
E:DG15
|
3.1
|
62.4
|
1.0
|
O6
|
E:DG2
|
3.2
|
67.1
|
1.0
|
O6
|
E:DG6
|
3.3
|
70.9
|
1.0
|
C6
|
E:DG14
|
3.3
|
60.8
|
1.0
|
K
|
E:K103
|
3.4
|
56.5
|
1.0
|
C6
|
E:DG1
|
3.4
|
69.4
|
1.0
|
K
|
E:K101
|
3.4
|
66.3
|
1.0
|
C6
|
E:DG9
|
3.5
|
69.5
|
1.0
|
C6
|
E:DG10
|
3.6
|
84.5
|
1.0
|
N1
|
E:DG14
|
3.6
|
58.9
|
1.0
|
C6
|
E:DG5
|
3.7
|
69.9
|
1.0
|
N1
|
E:DG1
|
3.7
|
69.6
|
1.0
|
N1
|
E:DG10
|
3.8
|
83.2
|
1.0
|
C6
|
E:DG15
|
3.8
|
64.8
|
1.0
|
C6
|
E:DG2
|
3.8
|
77.4
|
1.0
|
N1
|
E:DG9
|
3.9
|
74.3
|
1.0
|
N1
|
E:DG5
|
4.0
|
71.1
|
1.0
|
C6
|
E:DG6
|
4.0
|
77.1
|
1.0
|
N1
|
E:DG2
|
4.1
|
80.6
|
1.0
|
N1
|
E:DG15
|
4.1
|
67.4
|
1.0
|
N1
|
E:DG6
|
4.2
|
79.0
|
1.0
|
O6
|
G:DG5
|
4.6
|
57.4
|
1.0
|
C5
|
E:DG14
|
4.6
|
61.9
|
1.0
|
C5
|
E:DG1
|
4.7
|
67.8
|
1.0
|
C5
|
E:DG9
|
4.8
|
65.2
|
1.0
|
C5
|
E:DG2
|
4.8
|
77.7
|
1.0
|
C5
|
E:DG15
|
4.8
|
64.3
|
1.0
|
C5
|
E:DG10
|
4.9
|
81.3
|
1.0
|
O6
|
G:DG1
|
4.9
|
57.5
|
1.0
|
C5
|
E:DG5
|
5.0
|
73.8
|
1.0
|
C2
|
E:DG14
|
5.0
|
60.1
|
1.0
|
|
Potassium binding site 8 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 8 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 8 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:K103
b:56.5
occ:1.00
|
O6
|
G:DG5
|
2.3
|
57.4
|
1.0
|
O6
|
G:DG1
|
2.4
|
57.5
|
1.0
|
O6
|
G:DG14
|
2.6
|
72.3
|
1.0
|
O6
|
G:DG9
|
2.6
|
54.8
|
1.0
|
O6
|
E:DG1
|
3.0
|
57.5
|
1.0
|
O6
|
E:DG9
|
3.0
|
67.1
|
1.0
|
O6
|
E:DG5
|
3.2
|
62.0
|
1.0
|
O6
|
E:DG14
|
3.2
|
61.0
|
1.0
|
C6
|
G:DG5
|
3.3
|
67.9
|
1.0
|
K
|
G:K102
|
3.3
|
52.1
|
1.0
|
C6
|
G:DG1
|
3.4
|
71.5
|
1.0
|
K
|
E:K102
|
3.4
|
62.1
|
1.0
|
C6
|
G:DG9
|
3.6
|
61.5
|
1.0
|
C6
|
G:DG14
|
3.6
|
77.6
|
1.0
|
N1
|
G:DG1
|
3.6
|
78.0
|
1.0
|
N1
|
G:DG5
|
3.7
|
64.5
|
1.0
|
C6
|
E:DG1
|
3.7
|
69.4
|
1.0
|
C6
|
E:DG9
|
3.8
|
69.5
|
1.0
|
C6
|
E:DG14
|
3.9
|
60.8
|
1.0
|
N1
|
G:DG9
|
4.0
|
71.8
|
1.0
|
N1
|
E:DG1
|
4.0
|
69.6
|
1.0
|
C6
|
E:DG5
|
4.0
|
69.9
|
1.0
|
N1
|
G:DG14
|
4.0
|
77.2
|
1.0
|
N1
|
E:DG9
|
4.0
|
74.3
|
1.0
|
N1
|
E:DG14
|
4.3
|
58.9
|
1.0
|
N1
|
E:DG5
|
4.3
|
71.1
|
1.0
|
C5
|
G:DG5
|
4.6
|
65.8
|
1.0
|
O6
|
G:DG6
|
4.7
|
55.0
|
1.0
|
C5
|
G:DG1
|
4.7
|
66.0
|
1.0
|
C5
|
G:DG9
|
4.8
|
60.4
|
1.0
|
C5
|
G:DG14
|
4.8
|
77.9
|
1.0
|
C5
|
E:DG1
|
4.9
|
67.8
|
1.0
|
C5
|
E:DG9
|
4.9
|
65.2
|
1.0
|
C5
|
E:DG14
|
4.9
|
61.9
|
1.0
|
C2
|
G:DG1
|
5.0
|
70.7
|
1.0
|
|
Potassium binding site 9 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 9 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 9 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K101
b:53.8
occ:1.00
|
O6
|
G:DG7
|
2.6
|
48.4
|
1.0
|
O6
|
G:DG11
|
2.6
|
62.5
|
1.0
|
O6
|
G:DG3
|
2.7
|
62.7
|
1.0
|
O6
|
G:DG16
|
2.8
|
64.2
|
1.0
|
O6
|
G:DG10
|
2.8
|
55.7
|
1.0
|
O6
|
G:DG2
|
2.9
|
62.3
|
1.0
|
O6
|
G:DG15
|
3.1
|
59.0
|
1.0
|
K
|
G:K102
|
3.3
|
52.1
|
1.0
|
O6
|
G:DG6
|
3.3
|
55.0
|
1.0
|
C6
|
G:DG2
|
3.6
|
72.1
|
1.0
|
C6
|
G:DG11
|
3.6
|
70.3
|
1.0
|
C6
|
G:DG7
|
3.6
|
52.7
|
1.0
|
C6
|
G:DG16
|
3.7
|
63.1
|
1.0
|
C6
|
G:DG3
|
3.7
|
65.3
|
1.0
|
C6
|
G:DG10
|
3.7
|
63.7
|
1.0
|
N1
|
G:DG11
|
3.7
|
77.2
|
1.0
|
C6
|
G:DG6
|
3.8
|
56.5
|
1.0
|
N1
|
G:DG16
|
3.8
|
64.0
|
1.0
|
N1
|
G:DG3
|
3.8
|
66.2
|
1.0
|
N1
|
G:DG7
|
3.9
|
50.0
|
1.0
|
C6
|
G:DG15
|
3.9
|
60.6
|
1.0
|
N1
|
G:DG2
|
3.9
|
69.2
|
1.0
|
N1
|
G:DG6
|
3.9
|
50.7
|
1.0
|
N1
|
G:DG10
|
4.1
|
65.3
|
1.0
|
N1
|
G:DG15
|
4.2
|
55.4
|
1.0
|
N6
|
G:DA19
|
4.2
|
69.3
|
1.0
|
N1
|
G:DA19
|
4.2
|
70.2
|
1.0
|
C6
|
G:DA19
|
4.3
|
69.7
|
1.0
|
C5
|
G:DG2
|
4.7
|
71.2
|
1.0
|
C5
|
G:DG6
|
4.9
|
61.2
|
1.0
|
C5
|
G:DG10
|
4.9
|
62.3
|
1.0
|
C2
|
G:DA19
|
4.9
|
75.5
|
1.0
|
C5
|
G:DG11
|
4.9
|
64.5
|
1.0
|
C5
|
G:DG7
|
4.9
|
53.8
|
1.0
|
C2
|
G:DG6
|
5.0
|
49.3
|
1.0
|
C5
|
G:DG16
|
5.0
|
65.3
|
1.0
|
|
Potassium binding site 10 out
of 10 in 5dww
Go back to
Potassium Binding Sites List in 5dww
Potassium binding site 10 out
of 10 in the Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop
Mono view
Stereo pair view
|
A full contact list of Potassium with other atoms in the K binding
site number 10 of Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat - Ttloop within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:K102
b:52.1
occ:1.00
|
O6
|
G:DG2
|
2.5
|
62.3
|
1.0
|
O6
|
G:DG15
|
2.5
|
59.0
|
1.0
|
O6
|
G:DG6
|
2.5
|
55.0
|
1.0
|
O6
|
G:DG10
|
2.6
|
55.7
|
1.0
|
O6
|
G:DG14
|
2.9
|
72.3
|
1.0
|
O6
|
G:DG9
|
2.9
|
54.8
|
1.0
|
O6
|
G:DG1
|
3.1
|
57.5
|
1.0
|
K
|
G:K101
|
3.3
|
53.8
|
1.0
|
K
|
E:K103
|
3.3
|
56.5
|
1.0
|
C6
|
G:DG2
|
3.4
|
72.1
|
1.0
|
C6
|
G:DG10
|
3.4
|
63.7
|
1.0
|
C6
|
G:DG15
|
3.4
|
60.6
|
1.0
|
O6
|
G:DG5
|
3.5
|
57.4
|
1.0
|
C6
|
G:DG6
|
3.5
|
56.5
|
1.0
|
N1
|
G:DG2
|
3.7
|
69.2
|
1.0
|
N1
|
G:DG10
|
3.7
|
65.3
|
1.0
|
N1
|
G:DG6
|
3.8
|
50.7
|
1.0
|
C6
|
G:DG14
|
3.8
|
77.6
|
1.0
|
C6
|
G:DG1
|
3.8
|
71.5
|
1.0
|
N1
|
G:DG15
|
3.8
|
55.4
|
1.0
|
C6
|
G:DG9
|
3.8
|
61.5
|
1.0
|
N1
|
G:DG1
|
4.1
|
78.0
|
1.0
|
C6
|
G:DG5
|
4.1
|
67.9
|
1.0
|
N1
|
G:DG9
|
4.2
|
71.8
|
1.0
|
N1
|
G:DG14
|
4.2
|
77.2
|
1.0
|
N1
|
G:DG5
|
4.2
|
64.5
|
1.0
|
C5
|
G:DG10
|
4.7
|
62.3
|
1.0
|
C5
|
G:DG15
|
4.7
|
61.3
|
1.0
|
C5
|
G:DG2
|
4.7
|
71.2
|
1.0
|
O6
|
G:DG11
|
4.8
|
62.5
|
1.0
|
C5
|
G:DG1
|
4.9
|
66.0
|
1.0
|
O6
|
G:DG7
|
4.9
|
48.4
|
1.0
|
C5
|
G:DG6
|
4.9
|
61.2
|
1.0
|
C5
|
G:DG14
|
4.9
|
77.9
|
1.0
|
C5
|
G:DG9
|
5.0
|
60.4
|
1.0
|
|
Reference:
I.Russo Krauss,
S.Ramaswamy,
S.Neidle,
S.Haider,
G.N.Parkinson.
Structural Insights Into the Quadruplex-Duplex 3' Interface Formed From A Telomeric Repeat: A Potential Molecular Target. J.Am.Chem.Soc. V. 138 1226 2016.
ISSN: ESSN 1520-5126
PubMed: 26730610
DOI: 10.1021/JACS.5B10492
Page generated: Mon Aug 12 13:18:30 2024
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