Atomistry » Potassium » PDB 5cbv-5dea » 5da6
Atomistry »
  Potassium »
    PDB 5cbv-5dea »
      5da6 »

Potassium in PDB 5da6: Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014.

Protein crystallography data

The structure of Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014., PDB code: 5da6 was solved by B.H.M.Mooers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.79 / 1.05
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 42.890, 42.890, 266.936, 90.00, 90.00, 120.00
R / Rfree (%) 12.9 / 15.7

Potassium Binding Sites:

The binding sites of Potassium atom in the Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014. (pdb code 5da6). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014., PDB code: 5da6:

Potassium binding site 1 out of 1 in 5da6

Go back to Potassium Binding Sites List in 5da6
Potassium binding site 1 out of 1 in the Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014.


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Atomic Resolution Crystal Structure of Double-Stranded Rna 32 Base Pairs Long Determined From Random Starting Phases Angles in the Presence of Pseudo Translational Symmetry Using the Direct Methods Program SIR2014. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K101

b:31.1
occ:0.33
O2' A:G4 2.6 15.5 0.5
H5' A:A5 2.6 16.9 1.0
O2' A:G4 2.8 14.2 0.5
O3' A:G4 3.1 15.0 0.5
O3' A:G4 3.3 14.4 0.5
O A:HOH256 3.3 21.7 0.3
H4' A:G4 3.5 18.7 0.5
C5' A:A5 3.6 14.0 1.0
C2' A:G4 3.7 14.2 0.5
C3' A:G4 3.8 15.2 0.5
H5'' A:A5 3.8 16.9 1.0
C2' A:G4 3.9 13.7 0.5
OP1 A:A5 3.9 17.0 1.0
P A:A5 4.1 15.2 1.0
H2' A:G4 4.1 17.0 0.5
C3' A:G4 4.1 13.8 0.5
C4' A:G4 4.1 15.6 0.5
H2' A:G4 4.2 16.5 0.5
O5' A:A5 4.2 14.3 1.0
H4' A:G4 4.4 15.3 0.5
H4' A:A5 4.4 15.7 1.0
C4' A:A5 4.5 13.1 1.0
H3' A:G4 4.7 18.3 0.5
O A:HOH350 4.7 30.4 1.0
O4' A:A5 4.7 13.5 1.0
C1' A:G4 4.8 14.6 0.5
H1' A:G4 4.8 17.5 0.5
C4' A:G4 4.8 12.8 0.5
H3' A:G4 4.9 16.5 0.5
O4' A:G4 5.0 15.2 0.5

Reference:

B.H.M.Mooers, B.H.M.Mooers. N/A N/A.
ISSN: ESSN 1399-0047
DOI: 10.1107/S2059798316001224
Page generated: Sun Dec 13 23:55:43 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy