Atomistry » Potassium » PDB 5avx-5cbu » 5byd
Atomistry »
  Potassium »
    PDB 5avx-5cbu »
      5byd »

Potassium in PDB 5byd: Crystal Structure of Human Ribokinase in P21 Spacegroup

Enzymatic activity of Crystal Structure of Human Ribokinase in P21 Spacegroup

All present enzymatic activity of Crystal Structure of Human Ribokinase in P21 Spacegroup:
2.7.1.15;

Protein crystallography data

The structure of Crystal Structure of Human Ribokinase in P21 Spacegroup, PDB code: 5byd was solved by J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.96 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 46.590, 89.910, 75.140, 90.00, 98.80, 90.00
R / Rfree (%) 17.1 / 21.5

Other elements in 5byd:

The structure of Crystal Structure of Human Ribokinase in P21 Spacegroup also contains other interesting chemical elements:

Sodium (Na) 1 atom

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of Human Ribokinase in P21 Spacegroup (pdb code 5byd). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total only one binding site of Potassium was determined in the Crystal Structure of Human Ribokinase in P21 Spacegroup, PDB code: 5byd:

Potassium binding site 1 out of 1 in 5byd

Go back to Potassium Binding Sites List in 5byd
Potassium binding site 1 out of 1 in the Crystal Structure of Human Ribokinase in P21 Spacegroup


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of Human Ribokinase in P21 Spacegroup within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K401

b:61.2
occ:1.00
O B:ALA304 2.6 56.3 1.0
O B:SER301 2.6 43.9 1.0
O B:ASP263 2.7 66.6 1.0
O B:HOH506 2.8 57.7 1.0
O B:GLY306 2.9 58.0 1.0
OG B:SER310 2.9 38.9 1.0
O B:THR265 3.4 62.1 1.0
CB B:SER310 3.4 45.9 1.0
C B:SER301 3.7 42.8 1.0
C B:ASP263 3.7 70.3 1.0
C B:ALA304 3.8 60.9 1.0
C B:GLY306 4.0 59.3 1.0
CB B:ASP263 4.1 75.0 1.0
CA B:VAL302 4.1 48.5 1.0
OD1 B:ASP263 4.2 76.3 1.0
CG B:ASP263 4.2 77.1 1.0
C B:ALA305 4.3 65.3 1.0
N B:VAL302 4.3 44.4 1.0
N B:GLY306 4.3 64.1 1.0
N B:THR265 4.5 63.9 1.0
CA B:ALA305 4.5 65.9 1.0
C B:VAL302 4.5 50.3 1.0
CA B:ASP263 4.5 72.8 1.0
C B:THR265 4.5 62.9 1.0
N B:ALA305 4.6 64.2 1.0
N B:ALA304 4.6 59.4 1.0
CA B:SER301 4.7 39.2 1.0
N B:THR264 4.7 67.5 1.0
O B:ALA305 4.7 65.1 1.0
O B:VAL302 4.7 54.5 1.0
C B:THR264 4.7 64.6 1.0
CA B:ALA304 4.8 62.0 1.0
OG B:SER301 4.8 38.4 1.0
CB B:SER301 4.8 37.7 1.0
CA B:GLY306 4.8 62.6 1.0
OD2 B:ASP263 4.9 79.2 1.0
CA B:THR264 4.9 64.9 1.0
CA B:SER310 4.9 42.3 1.0
O B:THR307 4.9 46.3 1.0
CA B:THR265 5.0 64.5 1.0
N B:THR307 5.0 57.3 1.0

Reference:

J.Park, J.Chakrabarti, B.Singh, R.S.Gupta, M.S.Junop. Crystal Structure of Human Ribokinase in P21 Spacegroup To Be Published.
Page generated: Sun Dec 13 23:55:14 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy