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Potassium in PDB 5bki: Blocker-Free Closed Mthk Channel in Nanodisc

Other elements in 5bki:

The structure of Blocker-Free Closed Mthk Channel in Nanodisc also contains other interesting chemical elements:

Cadmium (Cd) 12 atoms

Potassium Binding Sites:

The binding sites of Potassium atom in the Blocker-Free Closed Mthk Channel in Nanodisc (pdb code 5bki). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 5 binding sites of Potassium where determined in the Blocker-Free Closed Mthk Channel in Nanodisc, PDB code: 5bki:
Jump to Potassium binding site number: 1; 2; 3; 4; 5;

Potassium binding site 1 out of 5 in 5bki

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Potassium binding site 1 out of 5 in the Blocker-Free Closed Mthk Channel in Nanodisc


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Blocker-Free Closed Mthk Channel in Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K403

b:32.1
occ:1.00
 OG1 E:THR59 2.9 38.0 1.0
OG1 C:THR59 2.9 38.0 1.0
OG1 G:THR59 2.9 38.0 1.0
OG1 A:THR59 2.9 38.0 1.0
O A:THR59 3.0 38.0 1.0
O C:THR59 3.0 38.0 1.0
O G:THR59 3.0 38.0 1.0
O E:THR59 3.0 38.0 1.0
CB G:THR59 3.6 38.0 1.0
CB C:THR59 3.6 38.0 1.0
CB E:THR59 3.6 38.0 1.0
CB A:THR59 3.6 38.0 1.0
K A:K404 3.7 33.3 1.0
C A:THR59 4.0 38.0 1.0
C C:THR59 4.0 38.0 1.0
C G:THR59 4.0 38.0 1.0
C E:THR59 4.0 38.0 1.0
CA A:THR59 4.4 38.0 1.0
CA C:THR59 4.4 38.0 1.0
CA G:THR59 4.4 38.0 1.0
CA E:THR59 4.4 38.0 1.0
CG2 E:THR59 4.7 38.0 1.0
CG2 G:THR59 4.7 38.0 1.0
CG2 C:THR59 4.7 38.0 1.0
CG2 A:THR59 4.8 38.0 1.0
O A:ALA58 4.9 40.4 1.0
O E:ALA58 4.9 40.4 1.0
O C:ALA58 5.0 40.4 1.0
O G:ALA58 5.0 40.4 1.0

Potassium binding site 2 out of 5 in 5bki

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Potassium binding site 2 out of 5 in the Blocker-Free Closed Mthk Channel in Nanodisc


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Blocker-Free Closed Mthk Channel in Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K404

b:33.3
occ:1.00
 O E:THR59 2.9 38.0 1.0
O A:VAL60 2.9 37.8 1.0
O G:THR59 2.9 38.0 1.0
O C:THR59 2.9 38.0 1.0
O A:THR59 2.9 38.0 1.0
O E:VAL60 2.9 37.8 1.0
O C:VAL60 2.9 37.8 1.0
O G:VAL60 2.9 37.8 1.0
K A:K405 3.1 36.5 1.0
K A:K403 3.7 32.1 1.0
C A:VAL60 3.7 37.8 1.0
C E:VAL60 3.8 37.8 1.0
C G:VAL60 3.8 37.8 1.0
C C:VAL60 3.8 37.8 1.0
C E:THR59 3.9 38.0 1.0
C G:THR59 3.9 38.0 1.0
C C:THR59 4.0 38.0 1.0
C A:THR59 4.0 38.0 1.0
CA A:VAL60 4.1 37.8 1.0
CA E:VAL60 4.1 37.8 1.0
CA C:VAL60 4.1 37.8 1.0
CA G:VAL60 4.1 37.8 1.0
N E:VAL60 4.5 37.8 1.0
N A:VAL60 4.5 37.8 1.0
N G:VAL60 4.5 37.8 1.0
N C:VAL60 4.5 37.8 1.0
N A:GLY61 4.8 41.3 1.0
N E:GLY61 4.8 41.3 1.0
N G:GLY61 4.8 41.3 1.0
N C:GLY61 4.9 41.3 1.0

Potassium binding site 3 out of 5 in 5bki

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Potassium binding site 3 out of 5 in the Blocker-Free Closed Mthk Channel in Nanodisc


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Blocker-Free Closed Mthk Channel in Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K405

b:36.5
occ:1.00
 O E:VAL60 2.8 37.8 1.0
O C:VAL60 2.9 37.8 1.0
O A:GLY61 2.9 41.3 1.0
O A:VAL60 2.9 37.8 1.0
O G:VAL60 2.9 37.8 1.0
O E:GLY61 2.9 41.3 1.0
O C:GLY61 2.9 41.3 1.0
O G:GLY61 2.9 41.3 1.0
K A:K404 3.1 33.3 1.0
K A:K406 3.7 37.9 1.0
C A:GLY61 3.8 41.3 1.0
C E:GLY61 3.8 41.3 1.0
C C:GLY61 3.8 41.3 1.0
C G:GLY61 3.8 41.3 1.0
C E:VAL60 4.0 37.8 1.0
C C:VAL60 4.0 37.8 1.0
C A:VAL60 4.0 37.8 1.0
C G:VAL60 4.0 37.8 1.0
CA E:GLY61 4.3 41.3 1.0
CA G:GLY61 4.3 41.3 1.0
CA C:GLY61 4.3 41.3 1.0
CA A:GLY61 4.3 41.3 1.0
N E:GLY61 4.6 41.3 1.0
N C:GLY61 4.7 41.3 1.0
N A:GLY61 4.7 41.3 1.0
N G:GLY61 4.7 41.3 1.0
N A:TYR62 4.9 46.5 1.0
N E:TYR62 4.9 46.5 1.0
N C:TYR62 4.9 46.5 1.0
N G:TYR62 4.9 46.5 1.0

Potassium binding site 4 out of 5 in 5bki

Go back to Potassium Binding Sites List in 5bki
Potassium binding site 4 out of 5 in the Blocker-Free Closed Mthk Channel in Nanodisc


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Blocker-Free Closed Mthk Channel in Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K406

b:37.9
occ:1.00
 O A:TYR62 2.9 46.5 1.0
O E:TYR62 2.9 46.5 1.0
O C:TYR62 2.9 46.5 1.0
O G:TYR62 2.9 46.5 1.0
O E:GLY61 3.4 41.3 1.0
O G:GLY61 3.4 41.3 1.0
O C:GLY61 3.4 41.3 1.0
O A:GLY61 3.4 41.3 1.0
C E:TYR62 3.6 46.5 1.0
C A:TYR62 3.6 46.5 1.0
C G:TYR62 3.7 46.5 1.0
C C:TYR62 3.7 46.5 1.0
K A:K405 3.7 36.5 1.0
CA E:TYR62 4.2 46.5 1.0
CA A:TYR62 4.3 46.5 1.0
CA C:TYR62 4.3 46.5 1.0
CA G:TYR62 4.3 46.5 1.0
N E:GLY63 4.4 52.3 1.0
N G:GLY63 4.4 52.3 1.0
N A:GLY63 4.4 52.3 1.0
C E:GLY61 4.4 41.3 1.0
N C:GLY63 4.4 52.3 1.0
C G:GLY61 4.5 41.3 1.0
C C:GLY61 4.5 41.3 1.0
C A:GLY61 4.5 41.3 1.0
CA G:GLY63 4.6 52.3 1.0
CA E:GLY63 4.6 52.3 1.0
CA A:GLY63 4.6 52.3 1.0
CA C:GLY63 4.6 52.3 1.0
N E:TYR62 4.9 46.5 1.0
N G:TYR62 4.9 46.5 1.0
N C:TYR62 4.9 46.5 1.0
N A:TYR62 4.9 46.5 1.0

Potassium binding site 5 out of 5 in 5bki

Go back to Potassium Binding Sites List in 5bki
Potassium binding site 5 out of 5 in the Blocker-Free Closed Mthk Channel in Nanodisc


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 5 of Blocker-Free Closed Mthk Channel in Nanodisc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K407

b:56.9
occ:1.00
 CD1 C:LEU95 4.3 45.8 1.0
CD1 E:LEU95 4.3 45.8 1.0
CD1 G:LEU95 4.3 45.8 1.0
CD1 A:LEU95 4.3 45.8 1.0

Reference:

F.Chen, F.Emelie, S.Nattakan, W.A.Toby, M.N.Crina. Quaternary Ammonium Ions Block and Inactivate Closed Calcium-Activated Potassium Channels Via Membrane Fenestrations To Be Published.
Page generated: Mon Aug 12 13:01:51 2024

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