Potassium in PDB 5af2: Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3

The structure of Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3, PDB code: 5af2 was solved by T.Brandmann, M.Jinek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.119 / 1.39
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.290, 74.960, 63.220, 90.00, 112.80, 90.00
R / Rfree (%)	17.13 / 19.28

The binding sites of Potassium atom in the Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3 (pdb code 5af2). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 2 binding sites of Potassium where determined in the Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3, PDB code: 5af2:
Jump to Potassium binding site number: 1; 2;

Potassium binding site 1 out of 2 in the Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1837 b:19.4 occ:1.00 O18 A:15P1836 2.7 31.7 1.0 O19 A:15P1836 2.8 39.6 1.0 O17 A:15P1836 2.9 22.2 1.0 O21 A:15P1836 3.0 37.0 1.0 O22 A:15P1836 3.0 42.9 1.0 O20 A:15P1836 3.0 45.7 1.0 O23 A:15P1836 3.0 37.8 1.0 H372 A:15P1836 3.4 42.3 1.0 C37 A:15P1836 3.4 35.2 1.0 H412 A:15P1836 3.4 54.1 1.0 H401 A:15P1836 3.4 52.6 1.0 H461 A:15P1836 3.4 50.1 1.0 C39 A:15P1836 3.5 41.6 1.0 C40 A:15P1836 3.5 43.9 1.0 H391 A:15P1836 3.5 50.0 1.0 C41 A:15P1836 3.5 45.1 1.0 H341 A:15P1836 3.6 31.6 1.0 C36 A:15P1836 3.6 27.4 1.0 C46 A:15P1836 3.6 41.8 1.0 C42 A:15P1836 3.6 40.9 1.0 H432 A:15P1836 3.6 44.0 1.0 H421 A:15P1836 3.7 49.0 1.0 C43 A:15P1836 3.7 36.7 1.0 C38 A:15P1836 3.7 38.2 1.0 C35 A:15P1836 3.7 25.9 1.0 C44 A:15P1836 3.7 40.9 1.0 H442 A:15P1836 3.7 49.1 1.0 C34 A:15P1836 3.8 26.3 1.0 C45 A:15P1836 3.8 44.1 1.0 H362 A:15P1836 3.8 32.9 1.0 H322 A:15P1836 3.9 28.5 1.0 H352 A:15P1836 3.9 31.1 1.0 H382 A:15P1836 4.1 45.9 1.0 H452 A:15P1836 4.1 53.0 1.0 H342 A:15P1836 4.3 31.6 1.0 H371 A:15P1836 4.3 42.3 1.0 H392 A:15P1836 4.4 50.0 1.0 H361 A:15P1836 4.4 32.9 1.0 H381 A:15P1836 4.5 45.9 1.0 H402 A:15P1836 4.5 52.6 1.0 H411 A:15P1836 4.5 54.1 1.0 H351 A:15P1836 4.5 31.1 1.0 H462 A:15P1836 4.5 50.1 1.0 H422 A:15P1836 4.5 49.0 1.0 H431 A:15P1836 4.6 44.0 1.0 H441 A:15P1836 4.6 49.1 1.0 H451 A:15P1836 4.7 53.0 1.0 C32 A:15P1836 4.7 23.8 1.0 H321 A:15P1836 4.9 28.5 1.0 C33 A:15P1836 5.0 25.1 1.0

Potassium binding site 2 out of 2 in the Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3 within 5.0Å range: probe atom residue distance (Å) B Occ A:K1838 b:29.3 occ:1.00 O5 A:15P1836 2.8 28.6 1.0 O4 A:15P1836 2.8 39.7 1.0 O1 A:15P1836 2.9 49.5 1.0 OXT A:15P1836 2.9 49.0 1.0 O6 A:15P1836 3.0 27.0 1.0 O2 A:15P1836 3.0 46.4 1.0 O3 A:15P1836 3.0 50.6 1.0 H17 A:15P1836 3.2 56.2 1.0 H21 A:15P1836 3.3 62.6 1.0 C7 A:15P1836 3.4 46.8 1.0 C1 A:15P1836 3.4 52.2 1.0 C8 A:15P1836 3.5 43.4 1.0 C10 A:15P1836 3.6 35.0 1.0 H141 A:15P1836 3.6 42.5 1.0 C2 A:15P1836 3.6 52.9 1.0 C11 A:15P1836 3.6 25.6 1.0 H101 A:15P1836 3.6 41.9 1.0 C3 A:15P1836 3.6 47.1 1.0 C4 A:15P1836 3.7 44.9 1.0 C12 A:15P1836 3.7 25.9 1.0 C5 A:15P1836 3.7 51.7 1.0 C9 A:15P1836 3.7 39.5 1.0 H15 A:15P1836 3.7 62.0 1.0 C6 A:15P1836 3.7 53.5 1.0 H13 A:15P1836 3.7 56.5 1.0 H18 A:15P1836 3.7 52.0 1.0 H14 A:15P1836 3.7 53.9 1.0 H111 A:15P1836 3.7 30.7 1.0 HXT A:15P1836 3.7 58.7 1.0 H122 A:15P1836 3.7 31.1 1.0 H12 A:15P1836 3.8 63.5 1.0 H152 A:15P1836 3.8 33.7 1.0 H26 A:15P1836 3.8 64.2 1.0 C13 A:15P1836 4.0 32.6 1.0 H19 A:15P1836 4.1 47.4 1.0 H131 A:15P1836 4.2 39.2 1.0 C14 A:15P1836 4.3 35.4 1.0 H27 A:15P1836 4.4 56.2 1.0 H11 A:15P1836 4.4 62.6 1.0 H28 A:15P1836 4.4 52.0 1.0 H102 A:15P1836 4.5 41.9 1.0 H29 A:15P1836 4.5 47.4 1.0 H112 A:15P1836 4.5 30.7 1.0 H22 A:15P1836 4.5 63.5 1.0 H23 A:15P1836 4.6 56.5 1.0 H24 A:15P1836 4.6 53.9 1.0 H121 A:15P1836 4.6 31.1 1.0 H25 A:15P1836 4.6 62.0 1.0 C15 A:15P1836 4.6 28.1 1.0 H16 A:15P1836 4.6 64.2 1.0 H151 A:15P1836 4.7 33.7 1.0 H132 A:15P1836 4.8 39.2 1.0 H142 A:15P1836 5.0 42.5 1.0

T.Brandmann, M.Jinek. Crystal Structure of the C-Terminal 2',5'-Phosphodiesterase Domain of Group A Rotavirus Protein VP3 To Be Published.