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Potassium in PDB 4zqr: Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis

Enzymatic activity of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis

All present enzymatic activity of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis:
1.1.1.205;

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4zqr was solved by Y.Kim, M.Makowska-Grzyska, M.Gu, M.Kavitha, L.Hedstrom, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.73 / 1.69
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 75.217, 75.233, 75.291, 108.30, 108.25, 111.88
R / Rfree (%) 15.1 / 18.3

Potassium Binding Sites:

The binding sites of Potassium atom in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis (pdb code 4zqr). This binding sites where shown within 5.0 Angstroms radius around Potassium atom.
In total 4 binding sites of Potassium where determined in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis, PDB code: 4zqr:
Jump to Potassium binding site number: 1; 2; 3; 4;

Potassium binding site 1 out of 4 in 4zqr

Go back to Potassium Binding Sites List in 4zqr
Potassium binding site 1 out of 4 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 1 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K609

b:20.5
occ:1.00
 O D:GLY338 2.7 19.6 1.0
O A:GLU511 2.7 20.4 1.0
O D:CYS341 2.8 20.4 1.0
O A:SER512 2.8 23.2 1.0
O D:GLY336 2.8 21.9 1.0
O A:HIS513 2.9 22.0 1.0
O D:HOH747 3.3 21.4 1.0
C A:SER512 3.4 22.2 1.0
C A:HIS513 3.5 24.1 1.0
C D:CYS341 3.7 18.4 1.0
C D:GLY338 3.8 22.3 1.0
C A:GLU511 3.8 22.1 1.0
C D:PRO337 3.9 19.3 1.0
O D:PRO337 4.0 20.0 1.0
N A:PRO514 4.0 20.9 1.0
C D:GLY336 4.0 19.5 1.0
CB D:CYS341 4.0 20.4 1.0
CA A:SER512 4.0 20.6 1.0
CD2 A:HIS515 4.1 20.8 1.0
N D:GLY338 4.1 19.7 1.0
N A:HIS513 4.1 20.4 1.0
N D:CYS341 4.2 17.7 1.0
CA D:CYS341 4.2 17.8 1.0
CA A:HIS513 4.3 21.2 1.0
CA A:PRO514 4.3 21.4 1.0
CA D:PRO337 4.3 19.8 1.0
NE2 A:HIS515 4.4 23.1 1.0
N A:SER512 4.4 17.2 1.0
CA D:GLY338 4.5 21.9 1.0
N D:PRO337 4.7 20.5 1.0
N D:SER339 4.8 18.6 1.0
N D:THR342 4.8 17.8 1.0
C D:SER339 4.8 21.6 1.0
O D:SER339 4.9 22.0 1.0
CA D:SER339 4.9 18.4 1.0
CD A:PRO514 5.0 21.8 1.0

Potassium binding site 2 out of 4 in 4zqr

Go back to Potassium Binding Sites List in 4zqr
Potassium binding site 2 out of 4 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 2 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:K611

b:20.4
occ:1.00
 O A:GLY338 2.7 19.0 1.0
O C:GLU511 2.7 18.8 1.0
O A:CYS341 2.8 19.8 1.0
O A:GLY336 2.8 22.7 1.0
O C:SER512 2.8 21.5 1.0
O C:HIS513 2.9 21.7 1.0
O A:HOH745 3.3 21.3 1.0
C C:SER512 3.4 21.8 1.0
C C:HIS513 3.5 21.2 1.0
C A:CYS341 3.7 20.6 1.0
C A:GLY338 3.8 22.3 1.0
C C:GLU511 3.8 19.8 1.0
C A:PRO337 3.9 23.4 1.0
O A:PRO337 4.0 21.7 1.0
C A:GLY336 4.0 22.0 1.0
CA C:SER512 4.0 20.5 1.0
CD2 C:HIS515 4.1 19.7 1.0
N C:PRO514 4.1 21.4 1.0
CB A:CYS341 4.1 22.4 1.0
N A:GLY338 4.1 21.2 1.0
N C:HIS513 4.1 19.1 1.0
N A:CYS341 4.2 20.2 1.0
CA A:CYS341 4.2 18.3 1.0
CA C:HIS513 4.3 20.9 1.0
CA A:PRO337 4.3 18.6 1.0
CA C:PRO514 4.3 20.0 1.0
NE2 C:HIS515 4.4 22.2 1.0
N C:SER512 4.4 17.9 1.0
CA A:GLY338 4.5 23.6 1.0
N A:PRO337 4.7 20.3 1.0
N A:SER339 4.8 17.5 1.0
N A:THR342 4.8 19.1 1.0
C A:SER339 4.8 19.6 1.0
O A:SER339 4.9 20.9 1.0
CA A:SER339 4.9 19.8 1.0

Potassium binding site 3 out of 4 in 4zqr

Go back to Potassium Binding Sites List in 4zqr
Potassium binding site 3 out of 4 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 3 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K605

b:20.4
occ:1.00
 O C:GLY338 2.6 19.3 1.0
O B:GLU511 2.7 20.4 1.0
O C:CYS341 2.7 20.4 1.0
O C:GLY336 2.8 22.6 1.0
O B:SER512 2.9 22.0 1.0
O B:HIS513 2.9 21.1 1.0
O C:HOH726 3.3 21.8 1.0
C B:SER512 3.4 22.9 1.0
C B:HIS513 3.5 22.4 1.0
C C:CYS341 3.7 19.7 1.0
C C:GLY338 3.8 22.5 1.0
C B:GLU511 3.8 22.3 1.0
C C:PRO337 3.9 19.8 1.0
O C:PRO337 4.0 19.5 1.0
C C:GLY336 4.0 20.1 1.0
CB C:CYS341 4.0 21.6 1.0
CA B:SER512 4.0 22.3 1.0
N B:PRO514 4.1 21.5 1.0
N C:GLY338 4.1 19.7 1.0
CD2 B:HIS515 4.1 21.4 1.0
N B:HIS513 4.1 19.8 1.0
N C:CYS341 4.1 18.3 1.0
CA C:CYS341 4.2 16.6 1.0
CA C:PRO337 4.3 22.4 1.0
CA B:HIS513 4.3 21.5 1.0
CA B:PRO514 4.3 21.3 1.0
NE2 B:HIS515 4.4 23.3 1.0
N B:SER512 4.4 19.1 1.0
CA C:GLY338 4.5 21.1 1.0
N C:PRO337 4.7 21.4 1.0
N C:SER339 4.7 18.4 1.0
N C:THR342 4.8 19.6 1.0
C C:SER339 4.8 21.6 1.0
CA C:SER339 4.9 19.4 1.0
O C:SER339 4.9 23.0 1.0

Potassium binding site 4 out of 4 in 4zqr

Go back to Potassium Binding Sites List in 4zqr
Potassium binding site 4 out of 4 in the Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis


Mono view


Stereo pair view

A full contact list of Potassium with other atoms in the K binding site number 4 of Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase From Mycobacterium Tuberculosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:K609

b:20.3
occ:1.00
 O B:GLY338 2.7 19.9 1.0
O D:GLU511 2.7 20.1 1.0
O B:CYS341 2.8 19.8 1.0
O B:GLY336 2.8 21.7 1.0
O D:SER512 2.9 22.7 1.0
O D:HIS513 3.0 20.1 1.0
O B:HOH736 3.3 21.7 1.0
C D:SER512 3.4 22.8 1.0
C D:HIS513 3.5 20.5 1.0
C B:CYS341 3.7 17.8 1.0
C B:GLY338 3.8 22.2 1.0
C D:GLU511 3.8 20.2 1.0
C B:PRO337 3.9 19.3 1.0
O B:PRO337 4.0 20.5 1.0
C B:GLY336 4.0 20.3 1.0
CA D:SER512 4.0 19.8 1.0
CB B:CYS341 4.1 21.7 1.0
N D:PRO514 4.1 23.4 1.0
N B:GLY338 4.1 19.3 1.0
N D:HIS513 4.1 20.0 1.0
N B:CYS341 4.2 19.1 1.0
CD2 D:HIS515 4.2 21.5 1.0
CA B:CYS341 4.2 16.9 1.0
CA D:HIS513 4.3 20.9 1.0
CA B:PRO337 4.3 21.5 1.0
CA D:PRO514 4.4 20.9 1.0
N D:SER512 4.4 17.9 1.0
NE2 D:HIS515 4.4 23.4 1.0
CA B:GLY338 4.5 21.2 1.0
N B:PRO337 4.7 21.7 1.0
N B:SER339 4.8 18.3 1.0
N B:THR342 4.8 20.8 1.0
C B:SER339 4.8 20.4 1.0
CA B:SER339 4.9 18.4 1.0
O B:SER339 4.9 21.9 1.0

Reference:

M.Makowska-Grzyska, Y.Kim, S.K.Gorla, Y.Wei, K.Mandapati, M.Zhang, N.Maltseva, G.Modi, H.I.Boshoff, M.Gu, C.Aldrich, G.D.Cuny, L.Hedstrom, A.Joachimiak. Mycobacterium Tuberculosis Impdh in Complexes with Substrates, Products and Antitubercular Compounds. Plos One V. 10 38976 2015.
ISSN: ESSN 1932-6203
PubMed: 26440283
DOI: 10.1371/JOURNAL.PONE.0138976
Page generated: Mon Aug 12 12:48:09 2024

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